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Genetic diversity of bats coronaviruses in the Atlantic Forest hotspot biome Brazil Luiz Gustavo Bentim G oes Ang elica Cristine de Almeida Campos Cristiano de Carvalho Guilherme Ambar Luzia Helena Queiroz Ariovaldo Pereira Cruz Neto Muhammad Munir Edison Luiz Durigon PII S1567 1348 16 30324 0 DOI doi 10 1016 j meegid 2016 07 034 Reference MEEGID 2863 To appear in Received date 3 May 2016 Revised date 22 July 2016 Accepted date 25 July 2016 Please cite this article as G oes Luiz Gustavo Bentim de Almeida Campos Ang elica Cristine de Carvalho Cristiano Ambar Guilherme Queiroz Luzia Helena Cruz Neto Ariovaldo Pereira Munir Muhammad Durigon Edison Luiz Genetic diver sity of bats coronaviruses in the Atlantic Forest hotspot biome Brazil 2016 doi 10 1016 j meegid 2016 07 034 This is a PDF fi le of an unedited manuscript that has been accepted for publication As a service to our customers we are providing this early version of the manuscript The manuscript will undergo copyediting typesetting and review of the resulting proof before it is published in its fi nal form Please note that during the production process errors may be discovered which could aff ect the content and all legal disclaimers that apply to the journal pertain ACCEPTED MANUSCRIPT ACCEPTED MANUSCRIPT Authors and Co authors Goes Luiz Gustavo Universidade de S o Paulo USP Dept Microbiologia Instituto de Ci ncias Biom dicas ICB Sao Paulo SP Brazil lgbgoes usp br Corresponding author Campos Angelica Almeida Universidade de S o Paulo USP Dept Microbiologia Instituto de Ci ncias Biom dicas ICB Sao Paulo SP Brazil camposac usp br Carvalho Cristiano Universidade Estadual Paulista UNESP Dept de Apoio Produ o e Sa de Animal Faculdade de Medicina Veterin ria de Ara atuba Ara atuba SP Brazil criscar fmva unesp br Ambar Guilherme Universidade Estadual Paulista UNESP Dept Zoologia Instituto de Bioci ncias Rio Claro SP Brazil guilhermeambar Queiroz Luzia Helena ACCEPTED MANUSCRIPT ACCEPTED MANUSCRIPT Universidade Estadual Paulista UNESP Dept de Apoio Produ o e Sa de Animal Faculdade de Medicina Veterin ria de Ara atuba Ara atuba SP Brazil lhqueiroz fmva unesp br Cruz Neto Ariovaldo Universidade Estadual Paulista UNESP Dept Zoologia Instituto de Bioci ncias Rio Claro SP Brazil ariovaldopcruz muhammad munir pirbright ac uk Durigon Edison Luiz Universidade de S o Paulo USP Dept Microbiologia Instituto de Ci ncias Biom dicas ICB Sao Paulo SP Brazil eldurigo usp br ACCEPTED MANUSCRIPT ACCEPTED MANUSCRIPT ACCEPTED MANUSCRIPT ACCEPTED MANUSCRIPT 99 and 100 samples were collected from Igua u National Park and from two distinct disturbed landscape sites respectively head boby forearm size and dental arch as described by Vizotto Gregorin Miranda et al 2011 ACCEPTED MANUSCRIPT ACCEPTED MANUSCRIPT 98 9 and were most closely related to bat CoVs KC110771 collected from Brazilian Molossus molossus and Tadarida brasiliensis Johnson et al 2015 ACCEPTED MANUSCRIPT ACCEPTED MANUSCRIPT Anthony S J Ojeda Flores R Rico Chavez O Navarrete Macias I Zambrana Torrelio C M Rostal M K Epstein J H Tipps T Liang E Sanchez Leon M Sotomayor Bonilla J Aguirre A A Avila Flores R Medellin R A Goldstein T Suzan G Daszak P Lipkin W I 2013 Coronaviruses in bats from Mexico J Gen Virol 94 1028 1038 Bolles M Donaldson E Baric R 2011 SARS CoV and emergent coronaviruses viral determinants of interspecies transmission Curr Opin Virol 1 624 634 Brandao P E Scheffer K Villarreal L Y Achkar S Oliveira Rde N Fahl Wde O Castilho J G Kotait I Richtzenhain L J 2008 A coronavirus detected in the vampire bat Desmodus rotundus Braz J Infect Dis 12 466 468 Calisher C H Childs J E Field H E Holmes K V Schountz T 2006 Bats important reservoir hosts of emerging viruses Clin Microbiol Rev 19 531 545 Carrington C V Foster J E Zhu H C Zhang J X Smith G J Thompson N Auguste A J Ramkissoon V Adesiyun A A Guan Y 2008 Detection and phylogenetic analysis of group 1 coronaviruses in South American bats Emerg Infect Dis 14 1890 1893 Chan J F Lau S K To K K Cheng V C Woo P C Yuen K Y 2015 Middle East respiratory syndrome coronavirus another zoonotic betacoronavirus causing SARS like disease Clin Microbiol Rev 28 465 522 Chu D K Poon L L Chan K H Chen H Guan Y Yuen K Y Peiris J S 2006 Coronaviruses in bent winged bats Miniopterus spp J Gen Virol 87 2461 2466 Chu D K Leung C Y Gilbert M Joyner P H Ng E M Tse T M Guan Y Peiris J S Poon L L 2011 Avian coronavirus in wild aquatic birds J Virol 85 12815 12820 Corman V M Rasche A Diallo T D Cottontail V M Stocker A Souza B F Correa J I Carneiro A J Franke C R Nagy M Metz M Knornschild M Kalko E K Ghanem S J Morales K D Salsamendi E Spinola M Herrler G Voigt C C Tschapka M Drosten C Drexler J F 2013 Highly diversified coronaviruses in neotropical bats J Gen Virol 94 1984 1994 Drexler J F Corman V M Drosten C 2014 Ecology evolution and classification of bat coronaviruses in the aftermath of SARS Antiviral Res 101 45 56 Goes L G Ruvalcaba S G Campos A A Queiroz L H de Carvalho C Jerez J A Durigon E L Davalos L I Dominguez S R 2013 Novel bat coronaviruses Brazil and Mexico Emerg Infect Dis 19 1711 1713 Gregorin R Taddei V A 2002 Chave Artificial para a Identifica o de Moloss deos Brasileiros Mammalia Chiroptera Mastozoologia Neotropical 9 13 32 Huynh J Li S Yount B Smith A Sturges L Olsen J C Nagel J Johnson J B Agnihothram S Gates J E Frieman M B Baric R S Donaldson E F 2012 Evidence supporting a zoonotic origin of human coronavirus strain NL63 J Virol 86 12816 12825 ICTV 2015 Virus Taxonomy 2015 release http www ictvonline org virusTaxonomy asp accessed 30 May 2016 ACCEPTED MANUSCRIPT ACCEPTED MANUSCRIPT Johnson C Hitchens P L Smiley Evans T Goldstein T Thomas K Clements A Joly D O Wolfe N D Daszak P Karesh W B Mazet J K 2015 Spillover and pandemic properties of zoonotic viruses with high host plasticity Sci Rep 5 14830 Lorusso A Decaro N Schellen P Rottier P J Buonavoglia C Haijema B J de Groot R J 2008 Gain preservation and loss of a group 1a coronavirus accessory glycoprotein J Virol 82 10312 10317 Miranda J M D Bernardi I P Passos F C 2011 Chave ilustrada para determina o dos morcegos da Regi o Sul do Brasil Curitiba Jo o M D Miranda 51p Nogueira M R de Lima I P Moratelli R Tavares V D C Gregorin R Peracchi A L 2014 Checklist of Brazilian bats with comments on original records Check List 10 808 821 Osborne C Cryan P M O Shea T J Oko L M Ndaluka C Calisher C H Berglund A D Klavetter M L Bowen R A Holmes K V Dominguez S R 2011 Alphacoronaviruses in New World bats prevalence persistence phylogeny and potential for interaction with humans PLoS One 6 e19156 Paglia A P Fonseca G A B Rylands A B Herrmann G Aguiar L M S Chiarello A G et al 2012 Lista Anotada dos Mam feros do Brasil Annotated Checklist of Brazilian Mammals Occasional Papers in Conservation Biology No 6 Conservation International Arlington VA Simmons N B 2005 Evolution An Eocene big bang for bats Science 307 527 528 Tamura K Stecher G Peterson D Filipski A Kumar S 2013 MEGA6 Molecular Evolutionary Genetics Analysis version 6 0 Mol Biol Evol 30 2725 2729 Vizotto L D Taddei V A 1973 Chave para determina o de quir pteros brasileiros Bol Cienc 1 1 72 Woo P C Lau S K Lam C S Lau C C Tsang A K Lau J H Bai R Teng J L Tsang C C Wang M Zheng B J Chan K H Yuen K Y 2012 Discovery of seven novel mammalian and avian coronaviruses in th
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