常用生物信息学数据库和分析工具网址

常用生物信息学数据库和分析工具网址常用生物信息学数据库和分析工具网址 数据库数据库因特网网址因特网网址 网上生物信息网上生物信息 学教程学教程 EBI自修课程http www ebi ac uk 2can NCBI 自修课程http www ncbi nlm nih gov Education 自修课程http lectures molgen mpg de online lectures html 生物信息学常 问的问题 http bioinformatics org faq 生物信息学机生物信息学机 构构 NCBIhttp www ncbi nlm nih gov International Nucleotide Sequence Database Collaboration http www ncbi nlm nih gov collab EBIhttp www ebi ac uk USDAhttp www nal usda gov Sanger Centrehttp genomic sanger ac uk 北京大学生物 信息学中心 数据数据库库信息信息发发 布及其它布及其它 GenBank Release Notes ftp ncbi nlm nih gov genbank gbrel txt dbEST summary report http www ncbi nlm nih gov dbEST dbESTsummarv html EMBL release notes http www genome ad jp dbget bin show man embl DDBJ release notes http www ddbj nig ac jp ddbjnew ddbj relnote html Eukaryotic promoter database release notes http www genome ad jp dbget dbget2 html SwissProt release notes http www genome ad jp dbget bin show man swissprot PIR release notes http www genome ad jp dbget bin show man pir PRF release notes http www genome ad jp dbget bin show man prf PDBSTR release notes http www genome ad jp dbget bin show man pdbstr Prosite release notes http www genome ad jp dbget bin show man prosite PDB release notes http www genome ad jp dbget bin show man pdb KEGG release notes http www genome ad jp dbget bin show man pathway 核苷酸数据核苷酸数据库库 GenBankhttp www ncbi nlm nih gov dbEST http www ncbi nlm nih gov dbEST index html dbSTS http www ncbi nlm nih gov dbSTS index html dbGSS http www ncbi nlm nih gov dbGSS index html Genome NCBI http www ncbi nlm nih gov entrez query fcgi db Genome dbSNP http www ncbi nlm nih gov SNP HTGShttp www ncbi nlm nih gov HTGS UniGenehttp www ncbi nlm nih gov UniGene EMBL 核苷酸 数据库 http www ebi ac uk embl Genome EBI http www ebi ac uk genomes 向 EMBL 数据 库提交序列 http www ebi ac uk embl Submission webin html DDBJhttp www ddbj nig ac jp Plant R gene database http www ncgr org rgenes 启启动动子数据子数据库库 Eukaryotic promoter database http www epd isb sib ch http www genome ad jp dbget dbget2 html 转录转录因子数据因子数据 库库 FRANSFAChttp transfac gbf de ooTFDhttp www ifti org 基因注基因注释释数据数据 库库 RAP DBhttp rapdb lab nig ac jp 基因分基因分类类数据数据 库库 Gene Ontology GO http www geneontology org 蛋白蛋白质质数据数据库库 SWISS PROT 或 TrEMBL http www ebi ac uk swissprot http www expasy ch sprot PIRhttp pir georgetown edu PRFhttp www kinasenet org pkr Welcome do http www prf or jp PDBSTRhttp www genome ad jp Prositehttp www expasy org prosite 结结构数据构数据库库 PDBhttp www rcsb org pdb http www pdb org NDBhttp ndbserver rutgers edu NDB ndb html http ndbserver rutgers edu DNA Binding Protein Database http ndbserver rutgers edu NDB structure finder dnabind index html NMR Nucleic Acids Database http ndbserver rutgers edu NDB structure finder nmr index html Protein Plus Database http ndbserver rutgers edu NDB structure finder protein index html Swiss 3Dimagehttp www expasy ch sw3d SCOPhttp scop mrc lmb cam ac uk scop CATHhttp www biochem ucl ac uk bsm cath 酶酶 代 代谢谢和和调调控控 路径数据路径数据库库 KEGGhttp www genome ad jp kegg Enzyme Nomenclature Database http expasy hcuge ch sprot enzyme html Protein Kinase Resource PKR http www sdsc edu kinases LIGANDhttp www genome ad jp dbget ligand html WIThttp www cme msu edu WIT EcoCychttp ecocyc PangeaS UM BBDhttp www labmed umn edu umbbd 多种代谢路径 数据库 http www unl edu stc 95 ResTools biotools biotools8 html 基因调控路径 数据库 TRANSPATH http transfac gbf de 基因基因组组数据数据库库 禾本科比较基 因组 http www gramene org GrainGenehttp www graingenes org Botanical Datahttp www calflora org calflora batanical html 日本水稻基因 组 RGP http rgp dna affrc go jp 水稻物理图谱http www genome clemson edu projects rice fpc http www genome arizona edu 华大水稻基因 组框架图 欧洲水稻测序 第 12 染色体 s fr OryGenesDB 水稻插入突变 体 http orygenesdb cirad fr Maize genomehttp www agron missouri edu Barley genomehttp www css orst edu Research barley nabgmp htm Forage grasses genomes http forages orst edu http www forages css orst edu Topics Species Grasses Triticum genomes http wheat pw usda gov index shtml Arabidopsis genome http www arabidopsis org SoyBasehttp soybase agron iastate edu Alfalfa genomehttp www alfalfa ksu edu Cotton genomehttp cottongenomecenter ucdavis edu Glycine max genome http www zmdb iastate edu PlantGDB glycine max html http www zmdb iastate edu PlantGDB C elegans genome http www acedb org 藻类 Chlamydomo nas 基因组 http www biology duke edu chlamy genome 粘菌 Dictyostelium 基因组 http dictygenome bcm tmc edu Animal genomes ArkDB http www thearkdb org FlyBasehttp flybase bio indiana edu bin fbidq html FBgn Mouse Genome Informatics http www informatics jax org bin query accession id MGI 9755 5 Saccharomyces Genome Database http genome www stanford edu cgi bin dbrun SacchDB find Locus 22PGK1 22 多种基因组数 据库 http www hgmp mrc ac uk GenomeWeb Rice Mutant Database 文献数据文献数据库库 PubMedhttp www ncbi nlm nih gov PubMed OMIMhttp www ncbi nlm nih gov Omim Agricolahttp www nal usda gov ag98 Rice Genetics Newsletter http www gramene org newsletters rice genetics Proceedings of the National Academy of Sciences USA PNAS http intl pnas org 关关键词为键词为基基础础 的数据的数据库检库检索索 Entrez http www ncbi nlm nih gov Entrez Entrez Nucleotide Sequence Search http www ncbi nlm nih gov Entrez nucleotide html Entrez Protein Sequence Search http www ncbi nlm nih gov Entrez protein html Batch Entrezhttp www ncbi nlm nih gov Entrez batch html Sequence Retrieval System India http bioinfo ernet in 80 srs5 Sequence Retrieval System Singapore http www bic nus edu sg 80 srs5 Sequence Retrieval System US http iubio bio indiana edu 80 srs srsc Sequence Retrieval System UK http srs ebi ac uk GetEntry Nucleotide Protein Sequence Search http ftp2 ddbj nig ac jp 8000 getstart e html Database Search with Key Words http ftp2 ddbj nig ac jp 8080 dbsearch e new html DBGET LinkD B http www genome ad jp dbget 序列序列为为基基础础的的 数据数据库检库检索索 BLASThttp www ncbi nlm nih gov BLAST FASTAhttp www ebi ac uk fasta33 index html BLITZhttp www2 ebi ac uk bic sw SSearchrs fr bin ssearch guess cgi Electronic PCRhttp www ncbi nlm nih gov STS Proteome analysis http www ebi ac uk proteome Global alignment http genome cs mtu edu 多序列分析多序列分析 Clustal multiple sequence alignment http dot imgen bcm tmc edu BCMhttp dot imgen bcm tmc edu 9331 multi align multi align html EBI ClustalW http www ebi ac uk clustaw index html Clustal multiple sequence alignment http genome cs mtu edu 修饰对序列对 位排列结果的 格式 Boxshade http www ch embnet org software BOX form html 系系谱谱分析分析 PAUPhttp onyx si edu PAUP EBI ClustalW analysis http www ebi ac uk GCG package PHYLIPhttp evolution genetics washington edu phylip html MEGA METRE E http www bio psu edu imeg Hennig86http www vims edu mes hennig software html GAMBIT http www lifesci ucla edu mcdbio Faculty Lake Research Progra ms MacCladehttp phylogeny arizona edu macclade macclade html Phylogenetic analysis http www unl edu stc 95 ResTools biotools biotools2 html ClustalXftp ftp igbmc u strasbg fr pub ClustalX MEGA TreeViewhttp taxonomy zoology gla ac uk rod treeview html 基因基因结结构构预测预测 分析分析 GENSCANhttp genes mit edu GENSCAN html http bioweb pasteur fr seqanal interfaces genscan simple html http bioweb pasteur fr GeneFinderhttp www bioscience org urllists genefind htm Gene Finding Gene Feature Searches http dot imgen bcm tmc edu Grailhttp compbio ornl gov Grail 1 3 GrailEXPhttp compbio ornl gov grailexp GeneMark http opal biology gatech edu GeneMark eukhmm cgi http genemark biology gatech edu GeneMark hmmchoice html Veilhttp www cs jhu edu labs compbio veil html AAThttp genome cs mtu edu aat html GENEID http www imim es GeneIdentification Geneid geneid input html Genlanghttp cbil humgen upenn edu sdong genlang home html GeneParserhttp beagle colorado edu eesnyder GeneParser html Glimmerhttp www cs jhu edu labs compbio glimmer html MZEFhttp www cshl org genefinder Procrusteshttp www hto usc edu software procrustes Tandem Repeats Finder http C3 biomath mssm edu trf html Repeatshttp bioweb pasteur fr seqanal interfaces repeats html 基因分基因分类类 GO Annotatorhttp udgenome ags udel edu gofigure 蛋白蛋白质结质结构构预预 测测分析分析 Expasyhttp www expasy ch CBShttp www cbs dtu dk Predicting protein http dot imgen bcm tmc edu 9331 pssprediction pssp html secondary structure Predicting protein 3D Structures http dove embl heidelberg de 3D Predicting protein structures http dot imgen bcm tmc edu 9331 seq search struc predict html 其它分析工具其它分析工具 和和软软件件 BioEdithttp www mbio ncsu edu BioEdit bioedit html Primer3 PCR 引物设计 http frodo wi mit edu cgi bin primer3 primer3 www cgi Putative DNA Sequencing Errors Check http www bork embl heidelberg de Frame MatInspectorhttp www gsf de cgi bin matsearch pl FastMhttp www gsf de cgi bin fastm pl Web Signal Scan http www dna affrc go jp htdocs sigscan signal