常用生物信息学网站

生物信息学网站EMBL biocomputing tutorialshttp:/www.bio.cam.ac.uk/Embnetut/Gcg/index.htmlPlant genome dababase tutorial/pgdic生物信息学机构NCBI/International Nucleotide Sequence Database Collaboration./collab/EBIhttp:/www.ebi.ac.uk/USDA/Sanger Centrehttp:/genomic.sanger.ac.uk/北京大学生物信息学中心数据库信息发布及其它GenBank Release Notes/genbank/gbrel.txtdbEST summary report/dbEST/dbESTsummarv.htmlEMBL release noteshttp:/www.genome.ad.jp/dbget-bin/showman?emblDDBJ release noteshttp:/www.ddbj.nig.ac.jp/ddbjnew/ddbjrelnote.htmlEukaryotic promoter database release noteshttp:/www.genome.ad.jp/dbget/dbget2.htmlSwissProt release noteshttp:/www.genome.ad.jp/dbget-bin/showman?swissprotPIR release noteshttp:/www.genome.ad.jp/dbget-bin/showman?pirPRF release noteshttp:/www.genome.ad.jp/dbget-bin/showman?prfPDBSTR release noteshttp:/www.genome.ad.jp/dbget-bin/showman?pdbstrProsite release noteshttp:/www.genome.ad.jp/dbget-bin/showman?prositePDB release noteshttp:/www.genome.ad.jp/dbget-bin/showman?pdbKEGG release noteshttp:/www.genome.ad.jp/dbget-bin/showman?pathway核苷酸数据库GenBank/dbEST/dbEST/index.htmldbSTS/dbSTS/index.htmldbGSS/dbGSS/index.htmlGenome (NCBI)/Entrez/Genome/org.htmldbSNP/SNP/HTGS/HTGS/UniGene/UniGene/EMBL核苷酸数据库http:/www.ebi.ac.uk/emblGenome (EBI)http:/www.ebi.ac.uk/genomes/向EMBL数据库提交序列http:/www.ebi.ac.uk/embl/Submission/webin.htmlDDBJhttp:/www.ddbj.nig.ac.jp/Plant R gene database/rgenes启动子数据库Eukaryotic promoter databasehttp:/www.epd.isb-sib.chhttp:/www.genome.ad.jp/dbget/dbget2.html转录因子数据库FRANSFAChttp:/transfac.gbf.deooTFD蛋白质数据库SWISS-PROT或TrEMBLhttp:/www.ebi.ac.uk/swissprot/http:/www.expasy.ch/sprot/PIR/pir/PRFhttp:/www.prf.or.jp/PDBSTRhttp:/www.genome.ad.jp/dbget-bin/wwwbfind?pdbstr-todayPrositehttp:/www.expasy.ch/sprot/prosite.html结构数据库PDB/pdbNDB/NDB/ndb.html/DNA-Binding Protein Database/NDB . /dnabind/index.htmlNMR Nucleic Acids Database/NDB/structure-finder/nmr/index.htmlProtein Plus Database/NDB . /protein/index.htmlSwiss 3Dimagehttp:/www.expasy.ch/sw3d/SCOPhttp:/scop.mrc-lmb.cam.ac.uk/scop/CATHhttp:/www.biochem.ucl.ac.uk/bsm/cath/酶、代谢和调控路径数据库KEGGhttp:/www.genome.ad.jp/kegg/kegg2.htmlEnzyme Nomenclature Databasehttp:/expasy.hcuge.ch/sprot/enzyme.htmlProtein Kinase Resource (PKR)/kinases/LIGANDhttp:/www.genome.ad.jp/dbget/ligand.htmlWIT/WIT/EcoCychttp:/ecocyc.PangeaS/ecocyc/UM-BBD/umbbd/多种代谢路径数据库/stc-95/ResTools/biotools/biotools8.html基因调控路径数据库(TRANSPATH)http:/transfac.gbf.de基因组数据库日本水稻基因组数据库(RGP)http:/rgp.dna.affrc.go.jp华大水稻基因组框架图欧洲水稻测序（第12染色体）s.fr拟南芥基因组数据库USDA Database/Demeters GenomesRiceGenes/cgi-bin/WebAce/webace?db=ricegenesRiceBlastDB/cgi-bin/WebAce/webace?db=riceblastdbFlyBase/.bin/fbidq.html?FBgn0003075Mouse Genome Informatics/bin/query_accession?id=MGI:97555Saccharomyces Genome Databasehttp:/genome-url=/cgi-bin/dbrun/SacchDB?find+Locus+%22PGK1%22/cgi-bin/dbrun/SacchDB?find+Locus+%22PGK1%22/url多种基因组数据库http:/www.hgmp.mrc.ac.uk/GenomeWeb文献数据库PubMed/PubMed/OMIM/Omim/Agricola/ag98/关键词为基础的数据库检索Entrez/Entrez/Entrez Nucleotide Sequence Search/Entrez/nucleotide.htmlEntrez Protein Sequence Search/Entrez/protein.htmlBatch Entrez/Entrez/batch.htmlSequence Retrieval System, Indiahttp:/bioinfo.ernet.in:80/srs5/Sequence Retrieval System, Singapore.sg:80/srs5/Sequence Retrieval System, US:80/srs/srscSequence Retrieval System, UKhttp:/srs.ebi.ac.uk/GetEntry Nucleotide & Protein Sequence Searchhttp:/ftp2.ddbj.nig.ac.jp:8000/getstart-e.htmlDatabase Search with Key Wordshttp:/ftp2.ddbj.nig.ac.jp:8080/dbsearch-e-new.htmlDBGET/LinkDBhttp:/www.genome.ad.jp/dbget/dbget2.html序列为基础的数据库检索BLAST/BLAST/FASTAhttp:/www2.ebi.ac.uk/fasta3/BLITZhttp:/www2.ebi.ac.uk/bicsw/SSearchrs.fr/bin/ssearch-guess.cgiElectronic PCR/STS/Proteome analysishttp:/www.ebi.ac.uk/proteome/多序列分析Clustal multiple sequence alignment:9331/multi-align/Options/clustalw.htmlBCM:9331/multi-align/multi-align.htmlEBI ClustalW analysishttp:/www.ebi.ac.uk系谱分析PAUP/PAUP/EBI ClustalW analysishttp:/www.ebi.ac.ukGCG package/PHYLIP/phylip.htmlMEGA/METREE/imegHennig86/mes/hennig/software.htmlGAMBIT/mcdb . /Research/Programs/MacClade/macclade/macclade.htmlPhylogenetic analysis/stc-95/ResTools/biotools/biotools2.html基因结构预测分析GENSCAN/GENSCAN.htmlGeneFinderhttp:/genomic.sanger.ac.uk/gf/gf.shtml/nucleo.htmlGene Feature Searches:9331/Grail/Grail-1.3/GrailEXP/grailexp/GeneMark/GeneMark/hmmchoice.htmlVeil/labs/compbio/veil.htmlAAT/aat.htmlGENEIDhttp:/www.imim.es/GeneIdentification/Geneid/geneid_input.htmlGenlang/sdong/genlang_home.htmlGeneParser/eesnyder/GeneParser.htmlGlimmer/labs/compbio/glimmer.htmlMZEF/genefinderProcrustes/software/procrustes/蛋白质结构预测分析Expasyhttp:/www.expasy.ch/Predicting protein secondary structure:9331/pssprediction/pssp.htmlPredicting protein 3D Structureshttp:/dove.embl-heidelberg.de/3D/Predicting protein structures:9331/seq-search/struc-predict.html其它分析工具和软件Putative DNA Sequencing Errors Checkhttp:/www.bork.embl-heidelberg.de/Frame/MatInspectorhttp:/www.gsf.de/cgi-bin/matsearch.plFastMhttp:/www.gsf.de/cgi-bin/fastm.plWeb Signal Scanhttp:/www.dna.affrc.go.jp/htdocs/sigscan/signal.htmlBCM Search Launcher:9331/seq-util/seq-util.htmlWebcutter/cutter/cut2.htmlTranslate DNA to proteinhttp:/www.expasy.ch/tools/dna.htmlABIMhttp:/www-biol.univ-mrs.fr/english/logligne.htmlsequence motifs:Pfamhttp:/www.s