常用生物数据库及数据格式ppt.ppt

常用生物数据库和数据格式 基本内容 生物数据库相关背景常用数据格式fasta fastq gff GenBank常用序列数据库美国国立生物技术信息中心 NCBI 欧洲生物信息学中心 EBI DDBJ常用基因功能数据库基因本体数据库 GeneOntology 京东基因与基因组百科全书 KEGG Interpro蛋白功能数据库常用基因组数据库UCSC基因组浏览器Ensembl基因组注释数据库 2 3 4 Sequence Interpro 5 数据多 数据格式多 数据库也多 如何找到我们想要的数据库呢 最新生物数据库列表 NucleicAcidsResearch 6 基本内容 生物数据库相关背景常用数据格式fasta fastq gff GenBank常用序列数据库美国国立生物技术信息中心 NCBI 欧洲生物信息学中心 EBI DDBJ常用基因功能数据库基因本体数据库 GeneOntology 京东基因与基因组百科全书 KEGG Interpro蛋白功能数据库常用基因组数据库UCSC基因组浏览器Ensembl基因组注释数据库 7 常见数据格式 8 常见数据格式 FASTAformatFASTQformatGenBankformatEMBLformatGFFformat 9 FASTAformat 10 描述行 分隔符一般50 100个字符每行没有标准的扩展名 FASTQsequenceformat 11 与fasta格式类似一条序列一般占用四行序列和质量值各占一行 12 88 GenBankFileFormat LOCUSSCU498455028bpDNAlinearPLN21 JUN 1999DEFINITIONSaccharomycescerevisiaeTCP1 betagene partialcds andAxl2p AXL2 andRev7p REV7 genes completecds ACCESSIONU49845VERSIONU49845 1GI 1293613KEYWORDS SOURCESaccharomycescerevisiae baker syeast ORGANISMSaccharomycescerevisiaeEukaryota Fungi Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces REFERENCE1 bases1to5028 AUTHORSTorpey L E Gibbs P E Nelson J andLawrence C W TITLECloningandsequenceofREV7 agenewhosefunctionisrequiredforDNAdamage inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10 11 1503 1509 1994 PUBMED7871890 FEATURESLocation QualifiersCDS 1 206 codon start 3 product TCP1 beta protein id AAA98665 1 db xref GI 1293614 translation SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHM gene687 3158 gene AXL2 ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct 4981tgccatgactcagattctaattttaagctattcaatttctctttgatc 13 88 GBFF文件分为三部分 LOCUSSCU498455028bpDNAlinearPLN21 JUN 1999DEFINITIONSaccharomycescerevisiaeTCP1 betagene partialcds andAxl2p AXL2 andRev7p REV7 genes completecds ACCESSIONU49845VERSIONU49845 1GI 1293613KEYWORDS SOURCESaccharomycescerevisiae baker syeast ORGANISMSaccharomycescerevisiaeEukaryota Fungi Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces REFERENCE1 bases1to5028 AUTHORSTorpey L E Gibbs P E Nelson J andLawrence C W TITLECloningandsequenceofREV7 agenewhosefunctionisrequiredforDNAdamage inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10 11 1503 1509 1994 PUBMED7871890FEATURESLocation QualifiersCDS 1 206 codon start 3 product TCP1 beta protein id AAA98665 1 db xref GI 1293614 translation SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHM gene687 3158 gene AXL2 ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct 4981tgccatgactcagattctaattttaagctattcaatttctctttgatc 头部包含整个记录的信息 描述符 第二部分包含了注释这一记录的特性 第三部分是核苷酸序列本身 所有序列数据库记录都在最后一行以 结尾 14 88 GBFF格式说明 LOCUSSCU498455028bpDNAlinearPLN21 JUN 1999DEFINITIONSaccharomycescerevisiaeTCP1 betagene partialcds andAxl2p AXL2 andRev7p REV7 genes completecds ACCESSIONU49845VERSIONU49845 1GI 1293613KEYWORDS SOURCESaccharomycescerevisiae baker syeast ORGANISMSaccharomycescerevisiaeEukaryota Fungi Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces REFERENCE1 bases1to5028 AUTHORSTorpey L E Gibbs P E Nelson J andLawrence C W TITLECloningandsequenceofREV7 agenewhosefunctionisrequiredforDNAdamage inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10 11 1503 1509 1994 PUBMED7871890 FEATURESLocation QualifiersCDS 1 206 codon start 3 product TCP1 beta protein id AAA98665 1 db xref GI 1293614 translation SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHM gene687 3158 gene AXL2 ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct 4981tgccatgactcagattctaattttaagctattcaatttctctttgatc 15 88 GBFF locus LOCUSSCU498455028bpDNAlinearPLN21 JUN 1999DEFINITIONSaccharomycescerevisiaeTCP1 betagene partialcds andAxl2p AXL2 andRev7p REV7 genes completecds ACCESSIONU49845VERSIONU49845 1GI 1293613KEYWORDS SOURCESaccharomycescerevisiae baker syeast ORGANISMSaccharomycescerevisiaeEukaryota Fungi Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces REFERENCE1 bases1to5028 AUTHORSTorpey L E Gibbs P E Nelson J andLawrence C W TITLECloningandsequenceofREV7 agenewhosefunctionisrequiredforDNAdamage inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10 11 1503 1509 1994 PUBMED7871890 FEATURESLocation QualifiersCDS 1 206 codon start 3 product TCP1 beta protein id AAA98665 1 db xref GI 1293614 translation SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHM gene687 3158 gene AXL2 ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct 4981tgccatgactcagattctaattttaagctattcaatttctctttgatc 16 88 GBFF locus LOCUSSCU498455028bpDNAlinearPLN21 JUN 1999DEFINITIONSaccharomycescerevisiaeTCP1 betagene partialcds andAxl2p AXL2 andRev7p REV7 genes completecds ACCESSIONU49845VERSIONU49845 1GI 1293613KEYWORDS SOURCESaccharomycescerevisiae baker syeast ORGANISMSaccharomycescerevisiaeEukaryota Fungi Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces REFERENCE1 bases1to5028 AUTHORSTorpey L E Gibbs P E Nelson J andLawrence C W TITLECloningandsequenceofREV7 agenewhosefunctionisrequiredforDNAdamage inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10 11 1503 1509 1994 PUBMED7871890 FEATURESLocation QualifiersCDS 1 206 codon start 3 product TCP1 beta protein id AAA98665 1 db xref GI 1293614 translation SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHM gene687 3158 gene AXL2 ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct 4981tgccatgactcagattctaattttaagctattcaatttctctttgatc 所有GBFF都起始于LOCUS行第一项是LOCUS名称 SCU49845 现在唯一的作用是它在数据库中是独一无二的 已不再具有任何实际意义 大多数情况下 它仅使用检索号码 accesessionnumber 以满足对LOCUS名称的要求 第二项是序列长度 5028bp 规定单条数据库记录的长度不能超过350kb 除历史原因外 GenBank已经很少接受长度低于50bp的序列了 第三项表明分子类型 DNA 其序列必须是一种单一的分子类型第四项是GenBank分类码 PLN 由3个字母组成 现在其作用仅限于在下载数据库时对数据库作简单的分类 最后一项是其最后修订日期 21 JUN 1999 有时也仅表示是数据首次公开日期 17 88 GenBank分类码 back 18 88 GBFF definition LOCUSSCU498455028bpDNAlinearPLN21 JUN 1999DEFINITIONSaccharomycescerevisiaeTCP1 betagene partialcds andAxl2p AXL2 andRev7p REV7 genes completecds ACCESSIONU49845VERSIONU49845 1GI 1293613KEYWORDS SOURCESaccharomycescerevisiae baker syeast ORGANISMSaccharomycescerevisiaeEukaryota Fungi Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces REFERENCE1 bases1to5028 AUTHORSTorpey L E Gibbs P E Nelson J andLawrence C W TITLECloningandsequenceofREV7 agenewhosefunctionisrequiredforDNAdamage inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10 11 1503 1509 1994 PUBMED7871890 FEATURESLocation QualifiersCDS 1 206 codon start 3 product TCP1 beta protein id AAA98665 1 db xref GI 1293614 translation SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHM gene687 3158 gene AXL2 ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct 4981tgccatgactcagattctaattttaagctattcaatttctctttgatc 19 88 GBFF definition LOCUSSCU498455028bpDNAlinearPLN21 JUN 1999DEFINITIONSaccharomycescerevisiaeTCP1 betagene partialcds andAxl2p AXL2 andRev7p REV7 genes completecds ACCESSIONU49845VERSIONU49845 1GI 1293613KEYWORDS SOURCESaccharomycescerevisiae baker syeast ORGANISMSaccharomycescerevisiaeEukaryota Fungi Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces REFERENCE1 bases1to5028 AUTHORSTorpey L E Gibbs P E Nelson J andLawrence C W TITLECloningandsequenceofREV7 agenewhosefunctionisrequiredforDNAdamage inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10 11 1503 1509 1994 PUBMED7871890 FEATURESLocation QualifiersCDS 1 206 codon start 3 product TCP1 beta protein id AAA98665 1 db xref GI 1293614 translation SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHM gene687 3158 gene AXL2 ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct 4981tgccatgactcagattctaattttaagctattcaatttctctttgatc LOCUS行的下一行为DEFINITION行 主要对GenBank记录中所含的生物学意义做出总结 它的说明内容包括了来源物种 基因 蛋白质名称 若序列是非编码区 则包含对序列功能的简单描述 若是一段编码区 则标明该序列是部分序列 partialcds 还是全序列 completecds 20 88 GBFF accession LOCUSSCU498455028bpDNAlinearPLN21 JUN 1999DEFINITIONSaccharomycescerevisiaeTCP1 betagene partialcds andAxl2p AXL2 andRev7p REV7 genes completecds ACCESSIONU49845VERSIONU49845 1GI 1293613KEYWORDS SOURCESaccharomycescerevisiae baker syeast ORGANISMSaccharomycescerevisiaeEukaryota Fungi Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces REFERENCE1 bases1to5028 AUTHORSTorpey L E Gibbs P E Nelson J andLawrence C W TITLECloningandsequenceofREV7 agenewhosefunctionisrequiredforDNAdamage inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10 11 1503 1509 1994 PUBMED7871890 FEATURESLocation QualifiersCDS 1 206 codon start 3 product TCP1 beta protein id AAA98665 1 db xref GI 1293614 translation SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHM gene687 3158 gene AXL2 ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct 4981tgccatgactcagattctaattttaagctattcaatttctctttgatc 21 88 GBFF accession LOCUSSCU498455028bpDNAlinearPLN21 JUN 1999DEFINITIONSaccharomycescerevisiaeTCP1 betagene partialcds andAxl2p AXL2 andRev7p REV7 genes completecds ACCESSIONU49845VERSIONU49845 1GI 1293613KEYWORDS SOURCESaccharomycescerevisiae baker syeast ORGANISMSaccharomycescerevisiaeEukaryota Fungi Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces REFERENCE1 bases1to5028 AUTHORSTorpey L E Gibbs P E Nelson J andLawrence C W TITLECloningandsequenceofREV7 agenewhosefunctionisrequiredforDNAdamage inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10 11 1503 1509 1994 PUBMED7871890 FEATURESLocation QualifiersCDS 1 206 codon start 3 product TCP1 beta protein id AAA98665 1 db xref GI 1293614 translation SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHM gene687 3158 gene AXL2 ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct 4981tgccatgactcagattctaattttaagctattcaatttctctttgatc 检索号 accession 是序列记录的惟一指针 通常由1个字母加5个数字 U12345 或由2个字母加6个数字 AF123456 组成 它在数据库中是惟一而且不变的 有时ACCESSION行中可能会出现多个检索号 可能是由于数据提交者提交了一条与原记录相关的新记录或新提交的记录覆盖了原有的旧记录 我们称第一个检索号为主检索号 其余的统称二级检索号 22 88 GBFF version LOCUSSCU498455028bpDNAlinearPLN21 JUN 1999DEFINITIONSaccharomycescerevisiaeTCP1 betagene partialcds andAxl2p AXL2 andRev7p REV7 genes completecds ACCESSIONU49845VERSIONU49845 1GI 1293613KEYWORDS SOURCESaccharomycescerevisiae baker syeast ORGANISMSaccharomycescerevisiaeEukaryota Fungi Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces REFERENCE1 bases1to5028 AUTHORSTorpey L E Gibbs P E Nelson J andLawrence C W TITLECloningandsequenceofREV7 agenewhosefunctionisrequiredforDNAdamage inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10 11 1503 1509 1994 PUBMED7871890 FEATURESLocation QualifiersCDS 1 206 codon start 3 product TCP1 beta protein id AAA98665 1 db xref GI 1293614 translation SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHM gene687 3158 gene AXL2 ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct 4981tgccatgactcagattctaattttaagctattcaatttctctttgatc 23 88 GBFF version LOCUSSCU498455028bpDNAlinearPLN21 JUN 1999DEFINITIONSaccharomycescerevisiaeTCP1 betagene partialcds andAxl2p AXL2 andRev7p REV7 genes completecds ACCESSIONU49845VERSIONU49845 1GI 1293613KEYWORDS SOURCESaccharomycescerevisiae baker syeast ORGANISMSaccharomycescerevisiaeEukaryota Fungi Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces REFERENCE1 bases1to5028 AUTHORSTorpey L E Gibbs P E Nelson J andLawrence C W TITLECloningandsequenceofREV7 agenewhosefunctionisrequiredforDNAdamage inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10 11 1503 1509 1994 PUBMED7871890 FEATURESLocation QualifiersCDS 1 206 codon start 3 product TCP1 beta protein id AAA98665 1 db xref GI 1293614 translation SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHM gene687 3158 gene AXL2 ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct 4981tgccatgactcagattctaattttaagctattcaatttctctttgatc VERSION行是版本号 格式为 检索号 版本号 版本号用于识别数据库中一条单一的特定核苷酸序列 在数据库中 如某条序列数据发生了变化 即使是单碱基的改变它的版本号也将增加 而其检索号保持不变 版本号系统与其后的GI geninfoidentifier 号系统是平行运行的 即当一条序列改变后 它将被赋予一个新的GI号 其版本号也将增加 蛋白质的翻译发生任何变换 核酸序列都将被赋予一个新的GI号 24 88 GBFF keywords LOCUSSCU498455028bpDNAlinearPLN21 JUN 1999DEFINITIONSaccharomycescerevisiaeTCP1 betagene partialcds andAxl2p AXL2 andRev7p REV7 genes completecds ACCESSIONU49845VERSIONU49845 1GI 1293613KEYWORDS SOURCESaccharomycescerevisiae baker syeast ORGANISMSaccharomycescerevisiaeEukaryota Fungi Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces REFERENCE1 bases1to5028 AUTHORSTorpey L E Gibbs P E Nelson J andLawrence C W TITLECloningandsequenceofREV7 agenewhosefunctionisrequiredforDNAdamage inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10 11 1503 1509 1994 PUBMED7871890 FEATURESLocation QualifiersCDS 1 206 codon start 3 product TCP1 beta protein id AAA98665 1 db xref GI 1293614 translation SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHM gene687 3158 gene AXL2 ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct 4981tgccatgactcagattctaattttaagctattcaatttctctttgatc 25 88 GBFF keywords LOCUSSCU498455028bpDNAlinearPLN21 JUN 1999DEFINITIONSaccharomycescerevisiaeTCP1 betagene partialcds andAxl2p AXL2 andRev7p REV7 genes completecds ACCESSIONU49845VERSIONU49845 1GI 1293613KEYWORDS SOURCESaccharomycescerevisiae baker syeast ORGANISMSaccharomycescerevisiaeEukaryota Fungi Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces REFERENCE1 bases1to5028 AUTHORSTorpey L E Gibbs P E Nelson J andLawrence C W TITLECloningandsequenceofREV7 agenewhosefunctionisrequiredforDNAdamage inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10 11 1503 1509 1994 PUBMED7871890 FEATURESLocation QualifiersCDS 1 206 codon start 3 product TCP1 beta protein id AAA98665 1 db xref GI 1293614 translation SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHM gene687 3158 gene AXL2 ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct 4981tgccatgactcagattctaattttaagctattcaatttctctttgatc 关键词行是用来描述序列的 如果该行没有任何内容 那么就只包含一个 由于没有对照词汇表 故NCBI GenBank拒绝接受关键词 它只存在于旧的记录中 26 88 GBFF source LOCUSSCU498455028bpDNAlinearPLN21 JUN 1999DEFINITIONSaccharomycescerevisiaeTCP1 betagene partialcds andAxl2p AXL2 andRev7p REV7 genes completecds ACCESSIONU49845VERSIONU49845 1GI 1293613KEYWORDS SOURCESaccharomycescerevisiae baker syeast ORGANISMSaccharomycescerevisiaeEukaryota Fungi Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces REFERENCE1 bases1to5028 AUTHORSTorpey L E Gibbs P E Nelson J andLawrence C W TITLECloningandsequenceofREV7 agenewhosefunctionisrequiredforDNAdamage inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10 11 1503 1509 1994 PUBMED7871890 FEATURESLocation QualifiersCDS 1 206 codon start 3 product TCP1 beta protein id AAA98665 1 db xref GI 1293614 translation SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHM gene687 3158 gene AXL2 ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct 4981tgccatgactcagattctaattttaagctattcaatttctctttgatc 27 88 GBFF source LOCUSSCU498455028bpDNAlinearPLN21 JUN 1999DEFINITIONSaccharomycescerevisiaeTCP1 betagene partialcds andAxl2p AXL2 andRev7p REV7 genes completecds ACCESSIONU49845VERSIONU49845 1GI 1293613KEYWORDS SOURCESaccharomycescerevisiae baker syeast ORGANISMSaccharomycescerevisiaeEukaryota Fungi Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces REFERENCE1 bases1to5028 AUTHORSTorpey L E Gibbs P E Nelson J andLawrence C W TITLECloningandsequenceofREV7 agenewhosefunctionisrequiredforDNAdamage inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10 11 1503 1509 1994 PUBMED7871890 FEATURESLocation QualifiersCDS 1 206 codon start 3 product TCP1 beta protein id AAA98665 1 db xref GI 1293614 translation SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHM gene687 3158 gene AXL2 ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct 4981tgccatgactcagattctaattttaagctattcaatttctctttgatc 对来源行 SOURCE 没有做特殊的规定 它通常包含序列来源生物的简称 有时也包含分子类型 在下面以NCBI的分类数据库为依据 指明物种的正式科学名称 28 88 GBFF reference LOCUSSCU498455028bpDNAlinearPLN21 JUN 1999DEFINITIONSaccharomycescerevisiaeTCP1 betagene partialcds andAxl2p AXL2 andRev7p REV7 genes completecds ACCESSIONU49845VERSIONU49845 1GI 1293613KEYWORDS SOURCESaccharomycescerevisiae baker syeast ORGANISMSaccharomycescerevisiaeEukaryota Fungi Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces REFERENCE1 bases1to5028 AUTHORSTorpey L E Gibbs P E Nelson J andLawrence C W TITLECloningandsequenceofREV7 agenewhosefunctionisrequiredforDNAdamage inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10 11 1503 1509 1994 PUBMED7871890 FEATURESLocation QualifiersCDS 1 206 codon start 3 product TCP1 beta protein id AAA98665 1 db xref GI 1293614 translation SSIYNGISTSGLDLNNGTIADMRQLGI