生物信息学网站汇总(doc 8页).doc

EMBL biocomputing tutorialshttp:/www.bio.cam.ac.uk/Embnetut/Gcg/index.htmlPlant genome dababase tutorial/pgdic生物信息学机构NCBI/International Nucleotide Sequence Database Collaboration./collab/EBI http:/www.ebi.ac.uk/USDA/Sanger Centrehttp:/genomic.sanger.ac.uk/北京大学生物信息学中心数据库信息发布及其它GenBank Release Notes/genbank/gbrel.txtdbEST summary report/dbEST/dbESTsummarv.htmlEMBL release noteshttp:/www.genome.ad.jp/dbget-bin/show man?emblDDBJ release noteshttp:/www.ddbj.nig.ac.jp/ddbjnew/ddbj relnote.htmlEukaryotic promoter database release noteshttp:/www.genome.ad.jp/dbget/dbget2.htmlSwissProt release noteshttp:/www.genome.ad.jp/dbget-bin/show man?swissprotPIR release noteshttp:/www.genome.ad.jp/dbget-bin/show man?pirPRF release notes http:/www.genome.ad.jp/dbget-bin/show man?prfPDBSTR release noteshttp:/www.genome.ad.jp/dbget-bin/show man?pdbstrProsite release noteshttp:/www.genome.ad.jp/dbget-bin/show man?prositePDB release notes http:/www.genome.ad.jp/dbget-bin/show man?pdbKEGG release noteshttp:/www.genome.ad.jp/dbget-bin/show man?pathway核苷酸数据库GenBank/dbEST /dbEST/index.htmldbSTS /dbSTS/index.htmldbGSS /dbGSS/index.htmlGenome (NCBI)/Entrez/Genome/org.htmldbSNP /SNP/HTGS/HTGS/UniGene/UniGene/EMBL核苷酸数据库http:/www.ebi.ac.uk/emblGenome (EBI)http:/www.ebi.ac.uk/genomes/向EMBL数据库提交序列http:/www.ebi.ac.uk/embl/Submission/webin.htmlDDBJ http:/www.ddbj.nig.ac.jp/Plant R gene database /rgenes启动子数据库Eukaryotic promoter database http:/www.epd.isb-sib.chhttp:/www.genome.ad.jp/dbget/dbget2.html转录因子数据库FRANSFAChttp:/transfac.gbf.deooTFD蛋白质数据库SWISS-PROT或TrEMBL http:/www.ebi.ac.uk/swissprot/http:/www.expasy.ch/sprot/PIR/pir/PRF http:/www.prf.or.jp/PDBSTRhttp:/www.genome.ad.jp/dbget-bin/www bfind?pdbstr-todayPrositehttp:/www.expasy.ch/sprot/prosite.html结构数据库PDB /pdbNDB/NDB/ndb.html/DNA-Binding Protein Database /NDB . /dnabind/index.htmlNMR Nucleic Acids Database/NDB/structure-finder/nmr/index.htmlProtein Plus Database/NDB . /protein/index.htmlSwiss 3Dimage http:/www.expasy.ch/sw3d/SCOPhttp:/scop.mrc-lmb.cam.ac.uk/scop/CATHhttp:/www.biochem.ucl.ac.uk/bsm/cath/酶、代谢和调控路径数据库KEGG http:/www.genome.ad.jp/kegg/kegg2.htmlEnzyme Nomenclature Database http:/expasy.hcuge.ch/sprot/enzyme.htmlProtein Kinase Resource (PKR)/kinases/LIGANDhttp:/www.genome.ad.jp/dbget/ligand.htmlWIT /WIT/EcoCychttp:/ecocyc.PangeaS/ecocyc/UM-BBD/umbbd/多种代谢路径数据库/stc-95/ResTools/biotools/biotools8.html基因调控路径数据库(TRANSPATH)http:/transfac.gbf.de基因组数据库日本水稻基因组数据库(RGP)http:/rgp.dna.affrc.go.jp华大水稻基因组框架图欧洲水稻测序（第12染色体）s.fr拟南芥基因组数据库USDA Database /Demeters GenomesRiceGenes /cgi-bin/WebAce/webace?db=ricegenesRiceBlastDB/cgi-bin/WebAce/webace?db=riceblastdbFlyBase/.bin/fbidq.html?FBgn0003075Mouse Genome Informatics /bin/query_accession?id=MGI:97555Saccharomyces Genome Databasehttp:/genome-url=/cgi-bin/dbrun/SacchDB?find+Locus+%22PGK1%22/cgi-bin/dbrun/SacchDB?find+Locus+%22PGK1%22/url多种基因组数据库http:/www.hgmp.mrc.ac.uk/GenomeWeb文献数据库PubMed /PubMed/OMIM/Omim/Agricola /ag98/关键词为基础的数据库检索Entrez/Entrez/Entrez Nucleotide Sequence Search/Entrez/nucleotide.htmlEntrez Protein Sequence Search/Entrez/protein.htmlBatch Entrez/Entrez/batch.htmlSequence Retrieval System, India http:/bioinfo.ernet.in:80/srs5/Sequence Retrieval System, Singapore .sg:80/srs5/Sequence Retrieval System, US :80/srs/srscSequence Retrieval System, UKhttp:/srs.ebi.ac.uk/GetEntry Nucleotide & Protein Sequence Searchhttp:/ftp2.ddbj.nig.ac.jp:8000/getstart-e.htmlDatabase Search with Key Words http:/ftp2.ddbj.nig.ac.jp:8080/dbsearch-e-new.htmlDBGET/LinkDB http:/www.genome.ad.jp/dbget/dbget2.html序列为基础的数据库检索BLAST/BLAST/FASTAhttp:/www2.ebi.ac.uk/fasta3/BLITZhttp:/www2.ebi.ac.uk/bicsw/SSearch rs.fr/bin/ssearch-guess.cgiElectronic PCR/STS/Proteome analysishttp:/www.ebi.ac.uk/proteome/多序列分析Clustal multiple sequence alignment:9331/multi-align/Options/clustalw. htmlBCM:9331/multi-align/multi-align.htmlEBI ClustalW analysishttp:/www.ebi.ac.uk系谱分析PAUP/PAUP/EBI ClustalW analysishttp:/www.ebi.ac.ukGCG package/PHYLIP /phylip.htmlMEGA/METREE /imegHennig86 /mes/hennig/software.htmlGAMBIT /mcdb . /Research/Programs/MacClade /macclade/macclade.htmlPhylogenetic analysis/stc-95/ResTools/biotools/biotools2.html基因结构预测分析GENSCAN/GENSCAN.htmlGeneFinderhttp:/genomic.sanger.ac.uk/gf/gf.shtml/nucleo.htmlGene Feature Searches :9331/Grail /Grail-1.3/GrailEXP/grailexp/GeneMark /GeneMark/hmmchoice.htmlVeil/labs/compbio/veil.htmlAAT /aat.htmlGENEID http:/www.imim.es/GeneIdentification/Geneid/geneid_input.htmlGenlang/sdong/genlang_home.htmlGeneParser /eesnyder/GeneParser.htmlGlimmer /labs/compbio/glimmer.htmlMZEF/genefinderProcrustes /software/procrustes/蛋白质结构预测分析Expasy http:/www.expasy.ch/Predicting protein secondary structure :9331/pssprediction/pssp.htmlPredicting protein 3D Structures http:/dove.embl-heidelberg.de/3D/Predicting protein structures :9331/seq-search/struc-predict.html其它分析工具和软件Putative DNA Sequencing Errors Checkhttp:/www.bork.embl-heidelberg.de/Frame/MatInspector http:/www.gsf.de/cgi-bin/matsearch.plFastMhttp:/www.gsf.de/cgi-bin/fastm.plWeb Signal Scanhttp:/www.dna.affrc.go.jp/htdocs/sigscan/signal.htmlBCM Search Launcher :9331/seq-util/seq-util.htmlWebcutter /cutter/cut2.htmlTranslate DNA to proteinhttp:/www.expasy.ch/tools/dna.htmlABIMhttp:/www-biol.univ-mrs.fr/english/logligne.htmlsequence motifs:Pfamhttp:/www.sa