常用生物信息学数据库和分析工具网址

常用生物信息学数据库和分析工具网址数据库因特网网址网上生物信息学教程EBI自修课程http:/www.ebi.ac.uk/2canNCBI自修课程/Education自修课程http:/lectures.molgen.mpg.de/online_lectures.html生物信息学常问的问题/faq/生物信息学机构NCBI/International Nucleotide Sequence Database Collaboration./collab/EBIhttp:/www.ebi.ac.uk/USDA/Sanger Centrehttp:/genomic.sanger.ac.uk/北京大学生物信息学中心数据库信息发布及其它GenBank Release Notes/genbank/gbrel.txtdbEST summary report/dbEST/dbESTsummarv.htmlEMBL release noteshttp:/www.genome.ad.jp/dbget-bin/show man?emblDDBJ release noteshttp:/www.ddbj.nig.ac.jp/ddbjnew/ddbj relnote.htmlEukaryotic promoter database release noteshttp:/www.genome.ad.jp/dbget/dbget2.htmlSwissProt release noteshttp:/www.genome.ad.jp/dbget-bin/show man?swissprotPIR release noteshttp:/www.genome.ad.jp/dbget-bin/show man?pirPRF release noteshttp:/www.genome.ad.jp/dbget-bin/show man?prfPDBSTR release noteshttp:/www.genome.ad.jp/dbget-bin/show man?pdbstrProsite release noteshttp:/www.genome.ad.jp/dbget-bin/show man?prositePDB release noteshttp:/www.genome.ad.jp/dbget-bin/show man?pdbKEGG release noteshttp:/www.genome.ad.jp/dbget-bin/show man?pathway核苷酸数据库GenBank/dbEST /dbEST/index.htmldbSTS /dbSTS/index.htmldbGSS /dbGSS/index.htmlGenome (NCBI)/entrez/query.fcgi?db=GenomedbSNP /SNP/HTGS/HTGS/UniGene/UniGene/EMBL核苷酸数据库http:/www.ebi.ac.uk/emblGenome (EBI)http:/www.ebi.ac.uk/genomes/向EMBL数据库提交序列http:/www.ebi.ac.uk/embl/Submission/webin.htmlDDBJhttp:/www.ddbj.nig.ac.jp/Plant R gene database/rgenes启动子数据库Eukaryotic promoter database http:/www.epd.isb-sib.chhttp:/www.genome.ad.jp/dbget/dbget2.html转录因子数据库FRANSFAChttp:/transfac.gbf.deooTFD基因注释数据库RAP-DBhttp:/rapdb.lab.nig.ac.jp基因分类数据库Gene Ontology (GO)蛋白质数据库SWISS-PROT或TrEMBLhttp:/www.ebi.ac.uk/swissprot/http:/www.expasy.ch/sprot/PIRPRF/pkr/Welcome.dohttp:/www.prf.or.jp/PDBSTRhttp:/www.genome.ad.jpProsite/prosite结构数据库PDB/pdbNDB/NDB/ndb.html/DNA-Binding Protein Database /NDB/structure-finder/dnabind/index.htmlNMR Nucleic Acids Database/NDB/structure-finder/nmr/index.htmlProtein Plus Database/NDB/structure-finder/protein/index.htmlSwiss 3Dimagehttp:/www.expasy.ch/sw3d/SCOPhttp:/scop.mrc-lmb.cam.ac.uk/scop/CATHhttp:/www.biochem.ucl.ac.uk/bsm/cath/酶、代谢和调控路径数据库KEGGhttp:/www.genome.ad.jp/kegg/Enzyme Nomenclature Databasehttp:/expasy.hcuge.ch/sprot/enzyme.htmlProtein Kinase Resource (PKR)/kinases/LIGANDhttp:/www.genome.ad.jp/dbget/ligand.htmlWIT/WIT/EcoCychttp:/ecocyc.PangeaS/ecocyc/UM-BBD/umbbd/多种代谢路径数据库/stc-95/ResTools/biotools/biotools8.html基因调控路径数据库(TRANSPATH)http:/transfac.gbf.de基因组数据库禾本科比较基因组GrainGeneBotanical Data/calflora/batanical.html日本水稻基因组 (RGP)http:/rgp.dna.affrc.go.jp水稻物理图谱/projects/rice/fpc华大水稻基因组框架图欧洲水稻测序（第12染色体）s.frOryGenesDB（水稻插入突变体）http:/orygenesdb.cirad.frMaize genomeBarley genome/Research/barley/nabgmp.htmForage grasses genomes//Topics/Species/Grasses/Triticum genomes/index.shtmlArabidopsis genomeSoyBaseAlfalfa genomeCotton genomeGlycine max genome/PlantGDB/glycine_max.html/PlantGDBC. elegans genome藻类（Chlamydomonas）基因组/chlamy_genome粘菌（Dictyostelium）基因组Animal genomes (ArkDB)FlyBase/.bin/fbidq.html?FBgn0003075Mouse Genome Informatics /bin/query_accession?id=MGI:97555Saccharomyces Genome Database/cgi-bin/dbrun/SacchDB?find+Locus+%22PGK1%22多种基因组数据库http:/www.hgmp.mrc.ac.uk/GenomeWebRice Mutant Database文献数据库PubMed/PubMed/OMIM/Omim/Agricola/ag98/Rice Genetics Newsletter/newsletters/rice_geneticsProceedings of the National Academy of Sciences USA (PNAS)关键词为基础的数据库检索Entrez /Entrez/Entrez Nucleotide Sequence Search/Entrez/nucleotide.htmlEntrez Protein Sequence Search/Entrez/protein.htmlBatch Entrez/Entrez/batch.htmlSequence Retrieval System, Indiahttp:/bioinfo.ernet.in:80/srs5/Sequence Retrieval System, Singapore.sg:80/srs5/Sequence Retrieval System, US:80/srs/srscSequence Retrieval System, UKhttp:/srs.ebi.ac.uk/GetEntry Nucleotide & Protein Sequence Searchhttp:/ftp2.ddbj.nig.ac.jp:8000/getstart-e.htmlDatabase Search with Key Wordshttp:/ftp2.ddbj.nig.ac.jp:8080/dbsearch-e-new.htmlDBGET/LinkDBhttp:/www.genome.ad.jp/dbget/序列为基础的数据库检索BLAST/BLAST/FASTAhttp:/www.ebi.ac.uk/fasta33/index.htmlBLITZhttp:/www2.ebi.ac.uk/bic_sw/SSearchrs.fr/bin/ssearch-guess.cgiElectronic PCR/STS/Proteome analysishttp:/www.ebi.ac.uk/proteome/Global alignment多序列分析Clustal multiple sequence alignmentBCM:9331/multi-align/multi-align.htmlEBI ClustalW http:/www.ebi.ac.uk/clustaw/index.htmlClustal multiple sequence alignment修饰对序列对位排列结果的格式（Boxshade）/software/BOX_form.html系谱分析PAUP/PAUP/EBI ClustalW analysishttp:/www.ebi.ac.ukGCG package/PHYLIP/phylip.htmlMEGA/METREE/imegHennig86/mes/hennig/software.htmlGAMBIT /mcdbio/Faculty/Lake/Research/Programs/MacClade/macclade/macclade.htmlPhylogenetic analysis/stc-95/ResTools/biotools/biotools2.htmlClustalXftp:/ftp-igbmc.u-strasbg.fr/pub/ClustalXMEGATreeViewhttp:/taxonomy.zoology.gla.ac.uk/rod/treeview.html基因结构预测分析GENSCAN/GENSCAN.htmlhttp:/bioweb.pasteur.fr/seqanal/interfaces/genscan-simple.htmlhttp:/bioweb.pasteur.frGeneFinder/urllists/genefind.htmGene FindingGene Feature SearchesGrail/Grail-1.3GrailEXP/grailexpGeneMark /GeneMark/eukhmm.cgi/GeneMark/hmmchoice.htmlVeil/labs/compbio/veil.htmlAAT/aat.htmlGENEID http:/www.imim.es/GeneIdentification/Geneid/geneid_input.htmlGenlang/sdong/genlang_home.htmlGeneParser/eesnyder/GeneParser.htmlGlimmer/labs/compbio/glimmer.htmlMZEF/genefinderProcrustes/software/procrustes/Tandem Repeats Finderhttp:/C3./trf.htmlRepeatshttp:/bioweb.pasteur.fr/seqanal/interfaces/repeats.html基因分类GO Annotator/gofigure蛋白质结构预测分析Expasyhttp:/www.expasy.ch/CBShttp:/www.cbs.dtu.dkPredicting protein secondary structure:9331/pssprediction/pssp.htmlPredicting protein 3D Structureshttp:/dove.embl-heidelberg.de/3D/Predicting protein structures :9331/seq-search/struc-predict.html其它分析工具和软件BioEdit/BioEdit/bioedit.htmlPrimer3（PCR引物设计）/cgi-bin/primer3/primer3_www.cgiPutative DNA Sequencing Errors Checkhttp:/www.bork.embl-heidelberg.de/Frame/MatInspectorhttp:/www.gsf.de/cgi-bin/matsearch.plFastMhttp:/www.gsf.de/cgi-bin/fastm.plWeb Signal Scanhttp:/www.dna.affrc.go.jp/htdocs/sigscan/signal.htmlBCM Search Launcher:9331/seq-util/seq-util.htmlWebcutterhttp:/www.firs