生物信息数据库网址

1、网上生物信息学教程EMBL biocomputing tutorials http:/www.bio.cam.ac.uk/Embnetut/Gcg/index.htmlPlant genome dababase tutorial/pgdic生物信息学机NCBI/International Nucleotide Sequence Database Collaboration./collab/EBIhttp:/www.ebi.ac.uk/USDAhtt

2、p://Sanger Centrehttp:/genomic.sanger.ac.uk/北京大学生物信息学中心数据库信息发布及其它GenBank Release Notes/genbank/gbrel.txtdbEST summary report/dbEST/dbESTsummarv.htmlEMBL release noteshttp:/www.bio.unizh.ch/db/docu.html?data=emrelEukaryotic promoter datab

3、ase release noteshttp:/www.genome.ad.jp/dbget/dbget2.htmlKEGG release noteshttp:/www.genome.jp/kegg/docs/relnote.html核苷酸数据库GenBank/dbEST/dbEST/index.htmldbSTS/dbSTS/index.htmldbGSS/dbGSS/index.htm

4、lGenome (NCBI)/entrez/query.fcgi?db=GenomedbSNP/SNP/HTGS/HTGS/UniGene/UniGene/EMBL核苷酸数据库 http:/www.ebi.ac.uk/emblGenome (EBI)http:/www.ebi.ac.uk/genomes/向EMBL数据库提交序列http:/www.ebi.ac.uk/embl/Submis

5、sion/webin.htmlDDBJhttp:/www.ddbj.nig.ac.jp/启动子数据库Eukaryotic promoter databasehttp:/www.epd.isb-sib.ch/转录因子数据库FRANSFAChttp:/www.gene-TFD基因分类数据库Gene Ontology (GO)蛋白质数据库SWISS-PROT或TrEMBLhttp:/www.ebi.ac.uk/swissprot/http:/www.expasy.ch/sprot/PIRhttp:/www-nbr

6、/pir/PRFhttp:/www.prf.or.jp/PDBSTRhttp:/www.genome.ad.jp/dbget-bin/www_bfind?pdbstrPrositehttp:/www.expasy.ch/sprot/prosite.html结构数据库PDB/pdbNDB/NDB/ndb.html/DNA-Binding Protein Databasehttp:/ndbs

7、/NDB/structure-finder/dnabind/index.htmlNMR Nucleic Acids Database/NDB/structure-finder/nmr/index.htmlProtein Plus Database/NDB/structure-finder/protein/index.htmlSwiss 3Dimagehttp:/www.expasy.ch/sw3d/SCOPhttp:/scop.mrc-lmb.cam.a

8、c.uk/scop/CATHhttp:/www.biochem.ucl.ac.uk/bsm/cath/酶、代谢和调控路径数据库KEGGhttp:/www.genome.ad.jp/kegg/Enzyme Nomenclature Databasehttp:/expasy.hcuge.ch/sprot/enzyme.htmlProtein Kinase Resource (PKR)/kinases/LIGANDhttp:/www.genome.ad.jp/dbget/ligand.htmlWIT/WIT/EcoCych

9、ttp:/ecocyc.PangeaSUM-BBD/umbbd/多种代谢路径数据库/stc-95/ResTools/biotools/biotools8.html基因调控路径数据库(TRANSPATH)http:/transfac.gbf.de基因组数据库禾本科比较基因组GrainGeneBotanical DatabasesBotanical Data/calflora/bata

10、nical.html日本水稻基因组 (RGP)http:/rgp.dna.affrc.go.jp水稻物理图谱/projects/rice/fpc华大水稻基因组框架图欧洲水稻测序（第12染色体）s.frMaize genomeBarley genome/Research/barley/nabgmp.htmForage grasses genomeshttp:/forages.orst.e

11、du//Topics/Species/Grasses/Triticum genomes/index.shtmlArabidopsis genomeSoyBase4Alfalfa genomeCotton genomeGlycine max genomehttp:/www.zmdb.ia

12、/PlantGDB/glycine_max.html/PlantGDBC. elegansgenome藻类（Chlamydomonas）基因组/chlamy_genome粘菌（Dictyostelium）基因组Animal genomes (ArkDB)FlyBase/Mouse

13、 Genome Informatics/Saccharomyces Genome Database/多种基因组数据库http:/www.hgmp.mrc.ac.uk/GenomeWeb文献数据库PubMed/PubMed/OMIM/Omim/Agricola/ag98/Rice Genetics Newsletterhttp:/www.gra

14、/newsletters/rice_geneticsProceedings of the National Academy of Sciences USA (PNAS)关键词为基础的数据库检索Entrez/Entrez/Entrez Nucleotide Sequence Search/Entrez/nucleotide.htmlEntrez Protein Sequence Searchhttp:/www.ncbi.nlm.nih.go

15、v/Entrez/protein.htmlSequence Retrieval System, Singapore.sg:80/srs5/Sequence Retrieval System, US:80/srs/srscSequence Retrieval System, UKhttp:/srs.ebi.ac.uk/GetEntry Nucleotide & Protein Sequence Searchhttp:/ftp2.ddbj.nig.ac.jp:8000/getstart-e.htmlDa

16、tabase Search with Key Wordshttp:/ftp2.ddbj.nig.ac.jp:8080/dbsearch-e-new.htmlDBGET/LinkDBhttp:/www.genome.ad.jp/dbget/dbget2.html序列为基础的数据库检索BLAST/BLAST/FASTAhttp:/www.ebi.ac.uk/fasta33/index.htmlBLITZhttp:/www2.ebi.ac.uk/bicsw/SSearchrs.fr/bin/ssearch-guess.cgiElectronic P

17、CR/STS/Proteome analysishttp:/www.ebi.ac.uk/proteome/多序列分析Clustal multiple sequence alignment:9331/multi-align/Options/clustalw. htmlBCM:9331/multi-align/multi-align.htmlEBI ClustalW analysishttp:/www.ebi.ac.uk系谱分析PAUPht

18、tp://PAUP/EBI ClustalW analysishttp:/www.ebi.ac.ukGCG packagePHYLIP/phylip.htmlMEGA/METREE/imegHennig86/mes/hennig/software.htmlGAMBIT/mcdbio/Faculty/Lake/Research/Programs/MacCladehttp

19、://macclade/macclade.htmlPhylogenetic analysis/stc-95/ResTools/biotools/biotools2.htmlClustalXftp:/ftp-igbmc.u-strasbg.fr/pub/ClustalXMEGA基因结构预测分析GENSCAN/GENSCAN.htmlhttp:/bioweb.pasteur.fr/seqanal/interfaces/genscan-simple.htmlhttp:/bioweb.pa

20、steur.frGeneFinderhttp:/genomic.sanger.ac.uk/gf/gf.shtmlGene Feature Searches:9331/Grail/Grail-1.3/GrailEXP/grailexp/GeneMark/GeneMark/eukhmm.cgi/GeneMark/hmmchoice.

21、htmlVeil/labs/compbio/veil.htmlAAT/aat.htmlGENEIDhttp:/www.imim.es/GeneIdentification/Geneid/geneid_input.htmlGenlang/sdong/genlang_home.htmlGeneParser/eesnyder/GeneParser.htmlGlimmer/l

22、abs/compbio/glimmer.htmlMZEF/genefinderProcrustes/software/procrustes/基因分类GO Annotator/gofigure蛋白质结构预测分析Expasyhttp:/www.expasy.ch/CBShttp:/www.cbs.dtu.dkPredicting protein secondary structure:9331/psspredict

23、ion/pssp.htmlPredicting protein 3D Structureshttp:/dove.embl-heidelberg.de/3D/Predicting protein structures:9331/seq-search/struc-predict.html其它分析工具和软件Putative DNA Sequencing Errors Checkhttp:/www.bork.embl-heidelberg.de/Frame/MatInspectorhttp:/www.gsf.de/cgi-bin/matsearch.plFastMhttp:/www.gsf.de/cgi-bin/fastm.plWeb Signal Scanhttp:/www.dna.affrc.go.jp/htdocs/sigscan/signal.htmlBCM Search Launcher:9331/seq-util/seq-util.htmlWebcutterTranslate DNA to proteinhttp:/www.expasy.ch/tools/dna.htmlABIMhttp:/