生物信息学网站汇编

1、EMBL biocomputing tutorials HYPERLINK http:/www.bio.cam.ac.uk/Embnetut/Gcg/index.html t _blank http:/www.bio.cam.ac.uk/Embnetut/Gcg/index.htmlPlant genome dababase tutorial HYPERLINK /pgdic t _blank /pgdic生物信息学机构NCBI HYPERLINK / t _blank /International Nucleotide Sequence Database Collaboration. HYP

2、ERLINK /collab/ t _blank /collab/EBI HYPERLINK http:/www.ebi.ac.uk/ t _blank http:/www.ebi.ac.uk/USDA HYPERLINK / t _blank /Sanger Centre HYPERLINK http:/genomic.sanger.ac.uk/ t _blank http:/genomic.sanger.ac.uk/北京大学生物信息学中心 HYPERLINK / t _blank 数据库信息公布及其它GenBank Release Notes HYPERLINK /genbank/gbre

3、l.txt t _blank /genbank/gbrel.txtdbEST summary report HYPERLINK /dbEST/dbESTsummarv.html t _blank /dbEST/dbESTsummarv.htmlEMBL release notes HYPERLINK http:/www.genome.ad.jp/dbget-bin/show t _blank http:/www.genome.ad.jp/dbget-bin/show man?emblDDBJ release notes HYPERLINK http:/www.ddbj.nig.ac.jp/dd

4、bjnew/ddbj t _blank http:/www.ddbj.nig.ac.jp/ddbjnew/ddbj relnote.htmlEukaryotic promoter database release notes HYPERLINK http:/www.genome.ad.jp/dbget/dbget2.html t _blank http:/www.genome.ad.jp/dbget/dbget2.htmlSwissProt release notes HYPERLINK http:/www.genome.ad.jp/dbget-bin/show t _blank http:/

5、www.genome.ad.jp/dbget-bin/show man?swissprotPIR release notes HYPERLINK http:/www.genome.ad.jp/dbget-bin/show t _blank http:/www.genome.ad.jp/dbget-bin/show man?pirPRF release notes HYPERLINK http:/www.genome.ad.jp/dbget-bin/show t _blank http:/www.genome.ad.jp/dbget-bin/show man?prfPDBSTR release

6、notes HYPERLINK http:/www.genome.ad.jp/dbget-bin/show t _blank http:/www.genome.ad.jp/dbget-bin/show man?pdbstrProsite release notes HYPERLINK http:/www.genome.ad.jp/dbget-bin/show t _blank http:/www.genome.ad.jp/dbget-bin/show man?prositePDB release notes HYPERLINK http:/www.genome.ad.jp/dbget-bin/

7、show t _blank http:/www.genome.ad.jp/dbget-bin/show man?pdbKEGG release notes HYPERLINK http:/www.genome.ad.jp/dbget-bin/show t _blank http:/www.genome.ad.jp/dbget-bin/show man?pathway核苷酸数据库GenBank HYPERLINK / t _blank /dbEST HYPERLINK /dbEST/index.html t _blank /dbEST/index.htmldbSTS HYPERLINK /dbS

8、TS/index.html t _blank /dbSTS/index.htmldbGSS HYPERLINK /dbGSS/index.html t _blank /dbGSS/index.htmlGenome (NCBI) HYPERLINK /Entrez/Genome/org.html t _blank /Entrez/Genome/org.htmldbSNP HYPERLINK /SNP/ t _blank /SNP/HTGS HYPERLINK /HTGS/ t _blank /HTGS/UniGene HYPERLINK /UniGene/ t _blank /UniGene/E

9、MBL核苷酸数据库 HYPERLINK http:/www.ebi.ac.uk/embl t _blank http:/www.ebi.ac.uk/emblGenome (EBI) HYPERLINK http:/www.ebi.ac.uk/genomes/ t _blank http:/www.ebi.ac.uk/genomes/向EMBL数据库提交序列 HYPERLINK http:/www.ebi.ac.uk/embl/Submission/webin.html t _blank http:/www.ebi.ac.uk/embl/Submission/webin.htmlDDBJ HYP

10、ERLINK http:/www.ddbj.nig.ac.jp/ t _blank http:/www.ddbj.nig.ac.jp/Plant R gene database HYPERLINK /rgenes t _blank /rgenes启动子数据库Eukaryotic promoter database HYPERLINK http:/www.epd.isb-sib.ch/ t _blank http:/www.epd.isb-sib.ch HYPERLINK http:/www.genome.ad.jp/dbget/dbget2.html t _blank http:/www.ge

11、nome.ad.jp/dbget/dbget2.html转录因子数据库FRANSFAC HYPERLINK http:/transfac.gbf.de/ t _blank http:/transfac.gbf.deooTFD HYPERLINK / t _blank 蛋白质数据库SWISS-PROT或TrEMBL HYPERLINK http:/www.ebi.ac.uk/swissprot/ t _blank http:/www.ebi.ac.uk/swissprot/ HYPERLINK http:/www.expasy.ch/sprot/ t _blank http:/www.expas

12、y.ch/sprot/PIR HYPERLINK /pir/ t _blank /pir/PRF HYPERLINK http:/www.prf.or.jp/ t _blank http:/www.prf.or.jp/PDBSTR HYPERLINK http:/www.genome.ad.jp/dbget-bin/www t _blank http:/www.genome.ad.jp/dbget-bin/www bfind?pdbstr-todayProsite HYPERLINK http:/www.expasy.ch/sprot/prosite.html t _blank http:/w

13、ww.expasy.ch/sprot/prosite.html结构数据库PDB HYPERLINK /pdb t _blank /pdb HYPERLINK / t _blank NDB HYPERLINK /NDB/ndb.html t _blank /NDB/ndb.html HYPERLINK / t _blank /DNA-Binding Protein Database HYPERLINK /NDB/structure-finder/dnabind/index.html t _blank /NDB . /dnabind/index.htmlNMR Nucleic Acids Data

14、base HYPERLINK /NDB/structure-finder/nmr/index.html t _blank /NDB/structure-finder/nmr/index.htmlProtein Plus Database HYPERLINK /NDB/structure-finder/protein/index.html t _blank /NDB . /protein/index.htmlSwiss 3Dimage HYPERLINK http:/www.expasy.ch/sw3d/ t _blank http:/www.expasy.ch/sw3d/SCOP HYPERL

15、INK http:/scop.mrc-lmb.cam.ac.uk/scop/ t _blank http:/scop.mrc-lmb.cam.ac.uk/scop/CATH HYPERLINK http:/www.biochem.ucl.ac.uk/bsm/cath/ t _blank http:/www.biochem.ucl.ac.uk/bsm/cath/酶、代谢和调控路径数据库KEGG HYPERLINK http:/www.genome.ad.jp/kegg/kegg2.html t _blank http:/www.genome.ad.jp/kegg/kegg2.htmlEnzyme

16、 Nomenclature Database HYPERLINK http:/expasy.hcuge.ch/sprot/enzyme.html t _blank http:/expasy.hcuge.ch/sprot/enzyme.htmlProtein Kinase Resource (PKR) HYPERLINK /kinases/ t _blank /kinases/LIGAND HYPERLINK http:/www.genome.ad.jp/dbget/ligand.html t _blank http:/www.genome.ad.jp/dbget/ligand.htmlWIT

17、HYPERLINK /WIT/ t _blank /WIT/EcoCyc HYPERLINK /ecocyc/ t _blank http:/ecocyc.PangeaS/ecocyc/UM-BBD HYPERLINK /umbbd/ t _blank /umbbd/多种代谢路径数据库 HYPERLINK /stc-95/ResTools/biotools/biotools8.html t _blank /stc-95/ResTools/biotools/biotools8.html基因调控路径数据库(TRANSPATH) HYPERLINK http:/transfac.gbf.de/ t

18、_blank http:/transfac.gbf.de基因组数据库日本水稻基因组数据库(RGP) HYPERLINK http:/rgp.dna.affrc.go.jp/ t _blank http:/rgp.dna.affrc.go.jp华大水稻基因组框架图 HYPERLINK / t _blank 欧洲水稻测序（第12染色体） HYPERLINK s.fr/ t _blank s.fr拟南芥基因组数据库 HYPERLINK / t _blank USDA Database HYPERLINK / t _blank /Demeters Genomes HYPERLINK / t _blan

19、k RiceGenes HYPERLINK /cgi-bin/WebAce/webace?db=ricegenes t _blank /cgi-bin/WebAce/webace?db=ricegenesRiceBlastDB HYPERLINK /cgi-bin/WebAce/webace?db=riceblastdb t _blank /cgi-bin/WebAce/webace?db=riceblastdbFlyBase HYPERLINK /.bin/fbidq.html?FBgn0003075 t _blank /.bin/fbidq.html?FBgn0003075Mouse Ge

20、nome Informatics HYPERLINK /bin/query_accession?id=MGI:97555 t _blank /bin/query_accession?id=MGI:97555Saccharomyces Genome Database HYPERLINK http:/genome- t _blank http:/genome-url=/cgi-bin/dbrun/SacchDB?find+Locus+%22PGK1%22/cgi-bin/dbrun/SacchDB?find+Locus+%22PGK1%22/url多种基因组数据库 HYPERLINK http:/

21、www.hgmp.mrc.ac.uk/GenomeWeb t _blank http:/www.hgmp.mrc.ac.uk/GenomeWeb文献数据库PubMed HYPERLINK /PubMed/ t _blank /PubMed/OMIM HYPERLINK /Omim/ t _blank /Omim/Agricola HYPERLINK /ag98/ t _blank /ag98/关键词为基础的数据库检索Entrez HYPERLINK /Entrez/ t _blank /Entrez/Entrez Nucleotide Sequence Search HYPERLINK /En

22、trez/nucleotide.html t _blank /Entrez/nucleotide.htmlEntrez Protein Sequence Search HYPERLINK /Entrez/protein.html t _blank /Entrez/protein.htmlBatch Entrez HYPERLINK /Entrez/batch.html t _blank /Entrez/batch.htmlSequence Retrieval System, India HYPERLINK http:/bioinfo.ernet.in/srs5/ t _blank http:/

23、bioinfo.ernet.in:80/srs5/Sequence Retrieval System, Singapore HYPERLINK .sg/srs5/ t _blank .sg:80/srs5/Sequence Retrieval System, US HYPERLINK /srs/srsc t _blank :80/srs/srscSequence Retrieval System, UK HYPERLINK http:/srs.ebi.ac.uk/ t _blank http:/srs.ebi.ac.uk/GetEntry Nucleotide & Protein Sequen

24、ce Search HYPERLINK http:/ftp2.ddbj.nig.ac.jp:8000/getstart-e.html t _blank http:/ftp2.ddbj.nig.ac.jp:8000/getstart-e.htmlDatabase Search with Key Words HYPERLINK http:/ftp2.ddbj.nig.ac.jp:8080/dbsearch-e-new.html t _blank http:/ftp2.ddbj.nig.ac.jp:8080/dbsearch-e-new.htmlDBGET/LinkDB HYPERLINK http

25、:/www.genome.ad.jp/dbget/dbget2.html t _blank http:/www.genome.ad.jp/dbget/dbget2.html序列为基础的数据库检索BLAST HYPERLINK /BLAST/ t _blank /BLAST/FASTA HYPERLINK http:/www2.ebi.ac.uk/fasta3/ t _blank http:/www2.ebi.ac.uk/fasta3/BLITZ HYPERLINK http:/www2.ebi.ac.uk/bicsw/ t _blank http:/www2.ebi.ac.uk/bicsw/S

26、Search HYPERLINK rs.fr/bin/ssearch-guess.cgi t _blank rs.fr/bin/ssearch-guess.cgiElectronic PCR HYPERLINK /STS/ t _blank /STS/Proteome analysis HYPERLINK http:/www.ebi.ac.uk/proteome/ t _blank http:/www.ebi.ac.uk/proteome/多序列分析Clustal multiple sequence alignment HYPERLINK :9331/multi-align/Options/c

27、lustalw. t _blank :9331/multi-align/Options/clustalw. htmlBCM HYPERLINK :9331/multi-align/multi-align.html t _blank :9331/multi-align/multi-align.htmlEBI ClustalW analysis HYPERLINK http:/www.ebi.ac.uk/ t _blank http:/www.ebi.ac.uk系谱分析PAUP HYPERLINK /PAUP/ t _blank /PAUP/EBI ClustalW analysis HYPERL

28、INK http:/www.ebi.ac.uk/ t _blank http:/www.ebi.ac.ukGCG package HYPERLINK / t _blank /PHYLIP HYPERLINK /phylip.html t _blank /phylip.htmlMEGA/METREE HYPERLINK /imeg t _blank /imegHennig86 HYPERLINK /mes/hennig/software.html t _blank /mes/hennig/software.htmlGAMBIT HYPERLINK /mcdbio/Faculty/Lake/Res

29、earch/Programs/ t _blank /mcdb . /Research/Programs/MacClade HYPERLINK /macclade/macclade.html t _blank /macclade/macclade.htmlPhylogenetic analysis HYPERLINK /stc-95/ResTools/biotools/biotools2.html t _blank /stc-95/ResTools/biotools/biotools2.html基因结构预测分析GENSCAN HYPERLINK /GENSCAN.html t _blank /G

30、ENSCAN.htmlGeneFinder HYPERLINK http:/genomic.sanger.ac.uk/gf/gf.shtml t _blank http:/genomic.sanger.ac.uk/gf/gf.shtml HYPERLINK /nucleo.html t _blank /nucleo.htmlGene Feature Searches HYPERLINK :9331/ t _blank :9331/Grail HYPERLINK /Grail-1.3/ t _blank /Grail-1.3/GrailEXP HYPERLINK /grailexp/ t _bl

31、ank /grailexp/GeneMark HYPERLINK /GeneMark/hmmchoice.html t _blank /GeneMark/hmmchoice.htmlVeil HYPERLINK /labs/compbio/veil.html t _blank /labs/compbio/veil.htmlAAT HYPERLINK /aat.html t _blank /aat.htmlGENEID HYPERLINK http:/www.imim.es/GeneIdentification/Geneid/geneid_input.html t _blank http:/ww

32、w.imim.es/GeneIdentification/Geneid/geneid_input.htmlGenlang HYPERLINK /sdong/genlang_home.html t _blank /sdong/genlang_home.htmlGeneParser HYPERLINK /eesnyder/GeneParser.html t _blank /eesnyder/GeneParser.htmlGlimmer HYPERLINK /labs/compbio/glimmer.html t _blank /labs/compbio/glimmer.htmlMZEF HYPER

33、LINK /genefinder t _blank /genefinderProcrustes HYPERLINK /software/procrustes/ t _blank /software/procrustes/蛋白质结构预测分析Expasy HYPERLINK http:/www.expasy.ch/ t _blank http:/www.expasy.ch/Predicting protein secondary structure HYPERLINK :9331/pssprediction/pssp.html t _blank :9331/pssprediction/pssp.h

34、tmlPredicting protein 3D Structures HYPERLINK http:/dove.embl-heidelberg.de/3D/ t _blank http:/dove.embl-heidelberg.de/3D/Predicting protein structures HYPERLINK :9331/seq-search/struc-predict.html t _blank :9331/seq-search/struc-predict.html其它分析工具和软件Putative DNA Sequencing Errors Check HYPERLINK ht

35、tp:/www.bork.embl-heidelberg.de/Frame/ t _blank http:/www.bork.embl-heidelberg.de/Frame/MatInspector HYPERLINK http:/www.gsf.de/cgi-bin/matsearch.pl t _blank http:/www.gsf.de/cgi-bin/matsearch.plFastM HYPERLINK http:/www.gsf.de/cgi-bin/fastm.pl t _blank http:/www.gsf.de/cgi-bin/fastm.plWeb Signal Sc

36、an HYPERLINK http:/www.dna.affrc.go.jp/htdocs/sigscan/signal.html t _blank http:/www.dna.affrc.go.jp/htdocs/sigscan/signal.htmlBCM Search Launcher HYPERLINK :9331/seq-util/seq-util.html t _blank :9331/seq-util/seq-util.htmlWebcutter HYPERLINK /cutter/cut2.html t _blank /cutter/cut2.htmlTranslate DNA to protein HYPERLINK http:/www.expasy.ch/tools/dna.html t _blank http:/www.expasy.ch/tools/dna.htmlABIM HYPERLINK http:/www-biol.univ-mrs.fr/english/logligne.html t _blank http:/www-biol.univ-