常用生物数据库及数据格式.ppt

常用生物数据库和数据格式,基本内容,生物数据库相关背景常用数据格式fasta,fastq,gff,GenBank常用序列数据库美国国立生物技术信息中心(NCBI)欧洲生物信息学中心(EBI)DDBJ常用基因功能数据库基因本体数据库（GeneOntology）京东基因与基因组百科全书（KEGG）Interpro蛋白功能数据库常用基因组数据库UCSC基因组浏览器Ensembl基因组注释数据库,2,3,4,Sequence,Interpro,5,?,数据多，数据格式多，数据库也多。,如何找到我们想要的数据库呢？,最新生物数据库列表（NucleicAcidsResearch）,6,基本内容,生物数据库相关背景常用数据格式fasta,fastq,gff,GenBank常用序列数据库美国国立生物技术信息中心(NCBI)欧洲生物信息学中心(EBI)DDBJ常用基因功能数据库基因本体数据库（GeneOntology）京东基因与基因组百科全书（KEGG）Interpro蛋白功能数据库常用基因组数据库UCSC基因组浏览器Ensembl基因组注释数据库,7,常见数据格式,8,常见数据格式,FASTAformatFASTQformatGenBankformatEMBLformatGFFformat,9,FASTAformat,10,描述行“”分隔符一般50-100个字符每行没有标准的扩展名,FASTQsequenceformat,11,与fasta格式类似一条序列一般占用四行序列和质量值各占一行,12/88,GenBankFileFormat,LOCUSSCU498455028bpDNAlinearPLN21-JUN-1999DEFINITIONSaccharomycescerevisiaeTCP1-betagene,partialcds;andAxl2p(AXL2)andRev7p(REV7)genes,completecds.ACCESSIONU49845VERSIONU49845.1GI:1293613KEYWORDS.SOURCESaccharomycescerevisiae(bakersyeast)ORGANISMSaccharomycescerevisiaeEukaryota;Fungi;Ascomycota;Saccharomycotina;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces.REFERENCE1(bases1to5028)AUTHORSTorpey,L.E.,Gibbs,P.E.,Nelson,J.andLawrence,C.W.TITLECloningandsequenceofREV7,agenewhosefunctionisrequiredforDNAdamage-inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10(11),1503-1509(1994)PUBMED7871890.FEATURESLocation/QualifiersCDS1.206/codon_start=3/product=TCP1-beta/protein_id=AAA98665.1/db_xref=GI:1293614/translation=SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHMgene687.3158/gene=AXL2.ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct.4981tgccatgactcagattctaattttaagctattcaatttctctttgatc/,13/88,GBFF文件分为三部分：,LOCUSSCU498455028bpDNAlinearPLN21-JUN-1999DEFINITIONSaccharomycescerevisiaeTCP1-betagene,partialcds;andAxl2p(AXL2)andRev7p(REV7)genes,completecds.ACCESSIONU49845VERSIONU49845.1GI:1293613KEYWORDS.SOURCESaccharomycescerevisiae(bakersyeast)ORGANISMSaccharomycescerevisiaeEukaryota;Fungi;Ascomycota;Saccharomycotina;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces.REFERENCE1(bases1to5028)AUTHORSTorpey,L.E.,Gibbs,P.E.,Nelson,J.andLawrence,C.W.TITLECloningandsequenceofREV7,agenewhosefunctionisrequiredforDNAdamage-inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10(11),1503-1509(1994)PUBMED7871890FEATURESLocation/QualifiersCDS1.206/codon_start=3/product=TCP1-beta/protein_id=AAA98665.1/db_xref=GI:1293614/translation=SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHMgene687.3158/gene=AXL2.ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct.4981tgccatgactcagattctaattttaagctattcaatttctctttgatc/,头部包含整个记录的信息（描述符）,第二部分包含了注释这一记录的特性,第三部分是核苷酸序列本身,所有序列数据库记录都在最后一行以“/”结尾,14/88,GBFF格式说明,LOCUSSCU498455028bpDNAlinearPLN21-JUN-1999DEFINITIONSaccharomycescerevisiaeTCP1-betagene,partialcds;andAxl2p(AXL2)andRev7p(REV7)genes,completecds.ACCESSIONU49845VERSIONU49845.1GI:1293613KEYWORDS.SOURCESaccharomycescerevisiae(bakersyeast)ORGANISMSaccharomycescerevisiaeEukaryota;Fungi;Ascomycota;Saccharomycotina;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces.REFERENCE1(bases1to5028)AUTHORSTorpey,L.E.,Gibbs,P.E.,Nelson,J.andLawrence,C.W.TITLECloningandsequenceofREV7,agenewhosefunctionisrequiredforDNAdamage-inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10(11),1503-1509(1994)PUBMED7871890.FEATURESLocation/QualifiersCDS1.206/codon_start=3/product=TCP1-beta/protein_id=AAA98665.1/db_xref=GI:1293614/translation=SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHMgene687.3158/gene=AXL2.ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct.4981tgccatgactcagattctaattttaagctattcaatttctctttgatc/,15/88,GBFF：locus,LOCUSSCU498455028bpDNAlinearPLN21-JUN-1999DEFINITIONSaccharomycescerevisiaeTCP1-betagene,partialcds;andAxl2p(AXL2)andRev7p(REV7)genes,completecds.ACCESSIONU49845VERSIONU49845.1GI:1293613KEYWORDS.SOURCESaccharomycescerevisiae(bakersyeast)ORGANISMSaccharomycescerevisiaeEukaryota;Fungi;Ascomycota;Saccharomycotina;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces.REFERENCE1(bases1to5028)AUTHORSTorpey,L.E.,Gibbs,P.E.,Nelson,J.andLawrence,C.W.TITLECloningandsequenceofREV7,agenewhosefunctionisrequiredforDNAdamage-inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10(11),1503-1509(1994)PUBMED7871890.FEATURESLocation/QualifiersCDS1.206/codon_start=3/product=TCP1-beta/protein_id=AAA98665.1/db_xref=GI:1293614/translation=SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHMgene687.3158/gene=AXL2.ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct.4981tgccatgactcagattctaattttaagctattcaatttctctttgatc/,16/88,GBFF：locus,LOCUSSCU498455028bpDNAlinearPLN21-JUN-1999DEFINITIONSaccharomycescerevisiaeTCP1-betagene,partialcds;andAxl2p(AXL2)andRev7p(REV7)genes,completecds.ACCESSIONU49845VERSIONU49845.1GI:1293613KEYWORDS.SOURCESaccharomycescerevisiae(bakersyeast)ORGANISMSaccharomycescerevisiaeEukaryota;Fungi;Ascomycota;Saccharomycotina;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces.REFERENCE1(bases1to5028)AUTHORSTorpey,L.E.,Gibbs,P.E.,Nelson,J.andLawrence,C.W.TITLECloningandsequenceofREV7,agenewhosefunctionisrequiredforDNAdamage-inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10(11),1503-1509(1994)PUBMED7871890.FEATURESLocation/QualifiersCDS1.206/codon_start=3/product=TCP1-beta/protein_id=AAA98665.1/db_xref=GI:1293614/translation=SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHMgene687.3158/gene=AXL2.ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct.4981tgccatgactcagattctaattttaagctattcaatttctctttgatc/,所有GBFF都起始于LOCUS行第一项是LOCUS名称（SCU49845）现在唯一的作用是它在数据库中是独一无二的，已不再具有任何实际意义。大多数情况下，它仅使用检索号码（accesessionnumber）以满足对LOCUS名称的要求。第二项是序列长度（5028bp）。规定单条数据库记录的长度不能超过350kb。除历史原因外，GenBank已经很少接受长度低于50bp的序列了。第三项表明分子类型（DNA），其序列必须是一种单一的分子类型第四项是GenBank分类码（PLN），由3个字母组成。现在其作用仅限于在下载数据库时对数据库作简单的分类。最后一项是其最后修订日期。（21-JUN-1999）。有时也仅表示是数据首次公开日期。,17/88,GenBank分类码,back,18/88,GBFF：definition,LOCUSSCU498455028bpDNAlinearPLN21-JUN-1999DEFINITIONSaccharomycescerevisiaeTCP1-betagene,partialcds;andAxl2p(AXL2)andRev7p(REV7)genes,completecds.ACCESSIONU49845VERSIONU49845.1GI:1293613KEYWORDS.SOURCESaccharomycescerevisiae(bakersyeast)ORGANISMSaccharomycescerevisiaeEukaryota;Fungi;Ascomycota;Saccharomycotina;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces.REFERENCE1(bases1to5028)AUTHORSTorpey,L.E.,Gibbs,P.E.,Nelson,J.andLawrence,C.W.TITLECloningandsequenceofREV7,agenewhosefunctionisrequiredforDNAdamage-inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10(11),1503-1509(1994)PUBMED7871890.FEATURESLocation/QualifiersCDS1.206/codon_start=3/product=TCP1-beta/protein_id=AAA98665.1/db_xref=GI:1293614/translation=SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHMgene687.3158/gene=AXL2.ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct.4981tgccatgactcagattctaattttaagctattcaatttctctttgatc/,19/88,GBFF：definition,LOCUSSCU498455028bpDNAlinearPLN21-JUN-1999DEFINITIONSaccharomycescerevisiaeTCP1-betagene,partialcds;andAxl2p(AXL2)andRev7p(REV7)genes,completecds.ACCESSIONU49845VERSIONU49845.1GI:1293613KEYWORDS.SOURCESaccharomycescerevisiae(bakersyeast)ORGANISMSaccharomycescerevisiaeEukaryota;Fungi;Ascomycota;Saccharomycotina;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces.REFERENCE1(bases1to5028)AUTHORSTorpey,L.E.,Gibbs,P.E.,Nelson,J.andLawrence,C.W.TITLECloningandsequenceofREV7,agenewhosefunctionisrequiredforDNAdamage-inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10(11),1503-1509(1994)PUBMED7871890.FEATURESLocation/QualifiersCDS1.206/codon_start=3/product=TCP1-beta/protein_id=AAA98665.1/db_xref=GI:1293614/translation=SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHMgene687.3158/gene=AXL2.ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct.4981tgccatgactcagattctaattttaagctattcaatttctctttgatc/,LOCUS行的下一行为DEFINITION行。主要对GenBank记录中所含的生物学意义做出总结。它的说明内容包括了来源物种、基因/蛋白质名称。若序列是非编码区，则包含对序列功能的简单描述；若是一段编码区，则标明该序列是部分序列（partialcds）还是全序列（completecds）。,20/88,GBFF：accession,LOCUSSCU498455028bpDNAlinearPLN21-JUN-1999DEFINITIONSaccharomycescerevisiaeTCP1-betagene,partialcds;andAxl2p(AXL2)andRev7p(REV7)genes,completecds.ACCESSIONU49845VERSIONU49845.1GI:1293613KEYWORDS.SOURCESaccharomycescerevisiae(bakersyeast)ORGANISMSaccharomycescerevisiaeEukaryota;Fungi;Ascomycota;Saccharomycotina;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces.REFERENCE1(bases1to5028)AUTHORSTorpey,L.E.,Gibbs,P.E.,Nelson,J.andLawrence,C.W.TITLECloningandsequenceofREV7,agenewhosefunctionisrequiredforDNAdamage-inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10(11),1503-1509(1994)PUBMED7871890.FEATURESLocation/QualifiersCDS1.206/codon_start=3/product=TCP1-beta/protein_id=AAA98665.1/db_xref=GI:1293614/translation=SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHMgene687.3158/gene=AXL2.ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct.4981tgccatgactcagattctaattttaagctattcaatttctctttgatc/,21/88,GBFF：accession,LOCUSSCU498455028bpDNAlinearPLN21-JUN-1999DEFINITIONSaccharomycescerevisiaeTCP1-betagene,partialcds;andAxl2p(AXL2)andRev7p(REV7)genes,completecds.ACCESSIONU49845VERSIONU49845.1GI:1293613KEYWORDS.SOURCESaccharomycescerevisiae(bakersyeast)ORGANISMSaccharomycescerevisiaeEukaryota;Fungi;Ascomycota;Saccharomycotina;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces.REFERENCE1(bases1to5028)AUTHORSTorpey,L.E.,Gibbs,P.E.,Nelson,J.andLawrence,C.W.TITLECloningandsequenceofREV7,agenewhosefunctionisrequiredforDNAdamage-inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10(11),1503-1509(1994)PUBMED7871890.FEATURESLocation/QualifiersCDS1.206/codon_start=3/product=TCP1-beta/protein_id=AAA98665.1/db_xref=GI:1293614/translation=SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHMgene687.3158/gene=AXL2.ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct.4981tgccatgactcagattctaattttaagctattcaatttctctttgatc/,检索号（accession）是序列记录的惟一指针。通常由1个字母加5个数字（U12345）或由2个字母加6个数字（AF123456）组成。它在数据库中是惟一而且不变的。有时ACCESSION行中可能会出现多个检索号，可能是由于数据提交者提交了一条与原记录相关的新记录或新提交的记录覆盖了原有的旧记录。我们称第一个检索号为主检索号，其余的统称二级检索号。,22/88,GBFF：version,LOCUSSCU498455028bpDNAlinearPLN21-JUN-1999DEFINITIONSaccharomycescerevisiaeTCP1-betagene,partialcds;andAxl2p(AXL2)andRev7p(REV7)genes,completecds.ACCESSIONU49845VERSIONU49845.1GI:1293613KEYWORDS.SOURCESaccharomycescerevisiae(bakersyeast)ORGANISMSaccharomycescerevisiaeEukaryota;Fungi;Ascomycota;Saccharomycotina;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces.REFERENCE1(bases1to5028)AUTHORSTorpey,L.E.,Gibbs,P.E.,Nelson,J.andLawrence,C.W.TITLECloningandsequenceofREV7,agenewhosefunctionisrequiredforDNAdamage-inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10(11),1503-1509(1994)PUBMED7871890.FEATURESLocation/QualifiersCDS1.206/codon_start=3/product=TCP1-beta/protein_id=AAA98665.1/db_xref=GI:1293614/translation=SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHMgene687.3158/gene=AXL2.ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct.4981tgccatgactcagattctaattttaagctattcaatttctctttgatc/,23/88,GBFF：version,LOCUSSCU498455028bpDNAlinearPLN21-JUN-1999DEFINITIONSaccharomycescerevisiaeTCP1-betagene,partialcds;andAxl2p(AXL2)andRev7p(REV7)genes,completecds.ACCESSIONU49845VERSIONU49845.1GI:1293613KEYWORDS.SOURCESaccharomycescerevisiae(bakersyeast)ORGANISMSaccharomycescerevisiaeEukaryota;Fungi;Ascomycota;Saccharomycotina;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces.REFERENCE1(bases1to5028)AUTHORSTorpey,L.E.,Gibbs,P.E.,Nelson,J.andLawrence,C.W.TITLECloningandsequenceofREV7,agenewhosefunctionisrequiredforDNAdamage-inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10(11),1503-1509(1994)PUBMED7871890.FEATURESLocation/QualifiersCDS1.206/codon_start=3/product=TCP1-beta/protein_id=AAA98665.1/db_xref=GI:1293614/translation=SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHMgene687.3158/gene=AXL2.ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct.4981tgccatgactcagattctaattttaagctattcaatttctctttgatc/,VERSION行是版本号，格式为：检索号.版本号。版本号用于识别数据库中一条单一的特定核苷酸序列。在数据库中，如某条序列数据发生了变化，即使是单碱基的改变它的版本号也将增加，而其检索号保持不变。版本号系统与其后的GI（geninfoidentifier）号系统是平行运行的。即当一条序列改变后，它将被赋予一个新的GI号，其版本号也将增加。蛋白质的翻译发生任何变换，核酸序列都将被赋予一个新的GI号。,24/88,GBFF：keywords,LOCUSSCU498455028bpDNAlinearPLN21-JUN-1999DEFINITIONSaccharomycescerevisiaeTCP1-betagene,partialcds;andAxl2p(AXL2)andRev7p(REV7)genes,completecds.ACCESSIONU49845VERSIONU49845.1GI:1293613KEYWORDS.SOURCESaccharomycescerevisiae(bakersyeast)ORGANISMSaccharomycescerevisiaeEukaryota;Fungi;Ascomycota;Saccharomycotina;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces.REFERENCE1(bases1to5028)AUTHORSTorpey,L.E.,Gibbs,P.E.,Nelson,J.andLawrence,C.W.TITLECloningandsequenceofREV7,agenewhosefunctionisrequiredforDNAdamage-inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10(11),1503-1509(1994)PUBMED7871890.FEATURESLocation/QualifiersCDS1.206/codon_start=3/product=TCP1-beta/protein_id=AAA98665.1/db_xref=GI:1293614/translation=SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHMgene687.3158/gene=AXL2.ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct.4981tgccatgactcagattctaattttaagctattcaatttctctttgatc/,25/88,GBFF：keywords,LOCUSSCU498455028bpDNAlinearPLN21-JUN-1999DEFINITIONSaccharomycescerevisiaeTCP1-betagene,partialcds;andAxl2p(AXL2)andRev7p(REV7)genes,completecds.ACCESSIONU49845VERSIONU49845.1GI:1293613KEYWORDS.SOURCESaccharomycescerevisiae(bakersyeast)ORGANISMSaccharomycescerevisiaeEukaryota;Fungi;Ascomycota;Saccharomycotina;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces.REFERENCE1(bases1to5028)AUTHORSTorpey,L.E.,Gibbs,P.E.,Nelson,J.andLawrence,C.W.TITLECloningandsequenceofREV7,agenewhosefunctionisrequiredforDNAdamage-inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10(11),1503-1509(1994)PUBMED7871890.FEATURESLocation/QualifiersCDS1.206/codon_start=3/product=TCP1-beta/protein_id=AAA98665.1/db_xref=GI:1293614/translation=SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHMgene687.3158/gene=AXL2.ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct.4981tgccatgactcagattctaattttaagctattcaatttctctttgatc/,关键词行是用来描述序列的。如果该行没有任何内容，那么就只包含一个“.”由于没有对照词汇表，故NCBI/GenBank拒绝接受关键词，它只存在于旧的记录中。,26/88,GBFF：source,LOCUSSCU498455028bpDNAlinearPLN21-JUN-1999DEFINITIONSaccharomycescerevisiaeTCP1-betagene,partialcds;andAxl2p(AXL2)andRev7p(REV7)genes,completecds.ACCESSIONU49845VERSIONU49845.1GI:1293613KEYWORDS.SOURCESaccharomycescerevisiae(bakersyeast)ORGANISMSaccharomycescerevisiaeEukaryota;Fungi;Ascomycota;Saccharomycotina;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces.REFERENCE1(bases1to5028)AUTHORSTorpey,L.E.,Gibbs,P.E.,Nelson,J.andLawrence,C.W.TITLECloningandsequenceofREV7,agenewhosefunctionisrequiredforDNAdamage-inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10(11),1503-1509(1994)PUBMED7871890.FEATURESLocation/QualifiersCDS1.206/codon_start=3/product=TCP1-beta/protein_id=AAA98665.1/db_xref=GI:1293614/translation=SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHMgene687.3158/gene=AXL2.ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct.4981tgccatgactcagattctaattttaagctattcaatttctctttgatc/,27/88,GBFF：source,LOCUSSCU498455028bpDNAlinearPLN21-JUN-1999DEFINITIONSaccharomycescerevisiaeTCP1-betagene,partialcds;andAxl2p(AXL2)andRev7p(REV7)genes,completecds.ACCESSIONU49845VERSIONU49845.1GI:1293613KEYWORDS.SOURCESaccharomycescerevisiae(bakersyeast)ORGANISMSaccharomycescerevisiaeEukaryota;Fungi;Ascomycota;Saccharomycotina;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces.REFERENCE1(bases1to5028)AUTHORSTorpey,L.E.,Gibbs,P.E.,Nelson,J.andLawrence,C.W.TITLECloningandsequenceofREV7,agenewhosefunctionisrequiredforDNAdamage-inducedmutagenesisinSaccharomycescerevisiaeJOURNALYeast10(11),1503-1509(1994)PUBMED7871890.FEATURESLocation/QualifiersCDS1.206/codon_start=3/product=TCP1-beta/protein_id=AAA98665.1/db_xref=GI:1293614/translation=SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHMgene687.3158/gene=AXL2.ORIGIN1gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattg61ccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagct.4981tgccatgactcagattctaattttaagctattcaatttctctttgatc/,对来源行(SOURCE)没有做特殊的规定，它通常包含序列来源生物的简称，有时也包含分子类型。在下面以NCBI的分类数据库为依据，指明物种的正式科学名称。,28/88,GBFF：reference,LOCUSSCU498455028bpDNAlinearPLN21-JUN-1999DEFINITIONSaccharomycescerevisiaeTCP1-betagene,partialcds;andAxl2p(AXL2)andRev7p(REV7)genes,completecds.ACCESSIONU49845VERSIONU49845.1GI:1293613KEYWORDS.SOURCESaccharomycescerevisiae(bakersyeast)