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Design, Modeling and Testing of a Flagellum-inspired Soft Underwater Propeller Exploiting Passive Elasticity Marcello Calisti2, Francesco Giorgio-Serchi3, Cesare Stefanini1,2, Madiha Farman1, Irfan Hussain1, Costanza Armanini1, Dongming Gan1, Lakmal Seneviratne1, Federico Renda1, AbstractFlagellated micro-organism are regarded as ex- cellent swimmers within their size scales. This, along with the simplicity of their actuation and the richness of their dynamics makes them a valuable source of inspiration to design contin- uum, self-propelled underwater robots. Here we introduce a soft, fl agellum-inspired system which exploits the compliance of its own body to passively attain a range of geometrical confi gurations from the interaction with the surrounding fl uid. The spontaneous formation of stable helical waves along the length of the fl agellum is responsible for the generation of positive net thrust. We investigate the relationship between actuation frequency and material elasticity in determining the steady-state confi guration of the system and its thrust output. This is ultimately used to perform a parameter identifi cation procedure of an elastodynamic model aimed at investigating the scaling laws in the propulsion of fl agellated robots. I. INTRODUCTION In recent times soft robotics has received growing popu- larity within the robotics community. This has been spear- headed, in part, by the prospect of tackling challenges which are hardly dealt with by traditional robotics technologies 1, 2, 3, 4. The ease with which soft robotics prototypes can be manufactured and tested and the fascination for their rich dynamics 5, 6 have also aided in fostering this niche of research. Among the numerous themes in which soft technologies have quickly branched, underwater robotics stands out 7, 8, on one hand, for its added complexity 9, 10 and, on the other hand, for offering an especially suitable context where to test these new kinds of machines 11, 12. Indeed, the close correspondence between the density of the aquatic medium and that of common rubber- like materials which most soft robots are made of enables underwater soft systems to operate unconstrained by the need for a supportive rigid structure, as it occurs in terrestrial environments 13. This has positive implications on the broadness of the design space, which has stimulated the development of a vast number of soft bioinspired underwater robots 14, 15, 16, 17. Within the context of aquatic organisms, major sources of inspiration have been drawn from fi sh and cephalopods 18, 8, 19, 20, 21, 22 but equally compelling for the purpose of designing bioinspired aquatic vehicles is the * Corresponding authorcostanza.armaniniku.ac.ae 1 Khalifa University Center for Autonomous Robotic Systems (KU- CARS), Khalifa University of Science and Technology, Abu Dhabi, UAE. 2 The BioRobotics Institute, Scuola Superiore SantAnna, Pisa, Italy. 3 Institute of Integrated Micro and Nano Systems of the University of Edinburgh, Edinburgh, UK. study of fl agellated bacteria 23 (Fig. 1). These prokary- otic microorganisms sport a vast repertoire of swimming strategies mediated by subtle differences in the structure and kinematics of the fl agellum which ultimately enable effi cient propulsion at the low Reynolds number scales 24, 25, 26. A limited range of fl agellum-inspired prototypes exists, characterized by a stiff structure and ranging in size in the micrometre scale 27 . However, fl agella are an interesting case study in soft robotics because they closely resemble, from a morphological and dynamics perspective, some of the archetypal continuum manipulators 28. Their evolutionary success as low Reynolds number propulsors makes them an appealing source of inspiration for the design of macro- scale mechatronics systems capable of navigating in high- viscosity fl uids (e.g. heavy oils) or, alternatively, micro-scale systems suited for locomotion in low-viscosity fl uids. Of special interest is the chance to exploit passive structural response and the ensuing kinematics of a fl agellum-like body to attend to the transitional regime between the low and intermediate Reynolds numbers. This unique feature, coupled with the capability of performing basic manipulation and the inherent compliance to interaction could make of such fl agellum-inspired systems a class of soft robots especially suited for intervention and inspection in fl uid-fi lled conduits of diverse size and fl uid composition. Here we present the fi rst design, model and testing of a macro-scale aquatic soft robot inspired by fl agellated prokaryotic bacteria. The paper is organized as follows. Section II describes the bioinspired design and fabrication of the soft robot, while in Section III details are given on the development of the dynamical model. Section IV is devoted to the experimental validation and it is followed by the discussion on the results, Section V. Finally, in Section VI the conclusions are drawn and the possible future development of the research are given. II. BIOINSPIRED DESIGN AND FABRICATION The design of the soft robot is based on the morphology and structure of the fl agellum encountered in prokaryotic monotrichous bacteria 31. This type of bacteria has a single helical fl agellum extending from one end of the cell body (Fig. 1). The fl agellum of this kind of bacteria is divided in a more fl exible end, the fi lament, and a stiffer base, the hook, which joins the fl agellum with the underlying cellular body. The hook is anchored to a spinning structure, the fl agellar motor, which is able to rotate in two directions. The torque of this motor is then transmitted across the hook to the fi lament, 2019 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS) Macau, China, November 4-8, 2019 978-1-7281-4003-2/19/$31.00 2019 IEEE3328 Fig. 1. A Caulobacter crescentus and the schematic of the fl agellum structure, modifi ed from 29 and 30. whose elastic response in interacting with the surrounding fl uid enables the onset of helical waves 32. The fl agella of micro-organisms are commonly referred to as either left- handed or right-handed, identifying with this terminology the tendency of the helical wave to travel from the base to end of the fi lament or otherwise according to the orientation of the motor rotation 31. The resulting effect is to either propel the organism forward or backward. A. Bioinspiration The choice to mimic prokaryotik fl agella is motivated by the chance to exploit the differential mechanical properties of the hook 33 and the fi lament 34 and the simplicity of its purely rotational actuation 35. The hook is resistent by design to torsional strain and stiffer to bending than the fl agellum. This arrangement, coupled with a single DOF rotary actuation of the base of the hook caters for a broader range of resultant kinematics than it would in the absence of the hook 36. Computational studies based on the coupled elastohy- drodynamics of the fl agella have shown that the driving parameter in the propulsion of these organisms are the rotational frequency of the motor, the stiffness of the hook and the geometrical characteristics of the cellular body 31. These imply that the swimming speed and effi ciency are characterized by two main parameters: the ratio between fi lament and cell-body length, and the number of helical waves occurring along the length of the fi lament. The latter of these parameters spontaneously emerges as a response of the geometrical and material properties of the fl agellum, the viscosity of the fl uid and the actuation of the motor. This is why a comprehensive characterization of the propulsion of fl agellated systems must account for the structural response of the passive elastic components, rather than prescribing their pre-determined shape (i.e. a fi xed number of helical waves of the fi lament) 27, 31. B. Design and Fabrication Based on the above specifi cations, the fl agellated soft system consists of three components: a soft cone-shaped unit, Fig. 2. Components of the fl agellated prototype: (a) tefl on mould with (a1) location of the backbone of the hook, (b) the backbone of the hook, (c) silicone cast and (c1) location of the embedded backbone. Fig. 3. Flagellum prototype without the canister: (1) the whole fl agellated silicone body, (2) the fi lament, (3) the hook, with the internal supportive structure visible across the silicone layer, (4) the cover of the canister, (5) the motor and (6) the shaft of the motor linked to the base of the hook. the fi lament; a pre-curved, torsion-resistant, constant cross- section unit, the hook and a rigid cylindrical canister which hosts electronics and a single electric motor which drives the rotation of the hook around its axis of symmetry, Fig. 2. The fi lament is achieved by casting silicone in a custom-made tefl on mould (Fig. 2)(a). The fi nal shape is a cone of basal diameter 25 mm, tip diameter 3 mm and 300 mm long. The hook capability to withstand torsional strain is enabled by a pre-curved backbone, 50 mm long, consisting of a steel coil coated by a polymeric fi lm, depicted in Fig. 2(b). The hook is then connected to the shaft of a Dynamixel AX-12A motor (Fig. 3), lodged inside a cylindrical waterproof canister 70 mm in diameter and 70 mm long. Waterproofi ng between the hook and the shaft of the motor is ensured by lubricated rubber O-rings. The fi nal prototype is depicted in Fig. 3. III. DYNAMICS MODELING To model the elastodynamics of such hybrid soft-rigid locomotor, we employ the geometric and unifying approach 3329 Fig. 4.Schematics of the kinematics of a soft-rigid multi-body system: j is the joint twist, g g gijg g gjrepresents the jthbody position and orientation with respect to the ithbody and X 0 L is the soft body curvilinear abscissa. developed in 37 and 38, which is a generalization to soft and hybrid systems of the geometric theory of rigid robots due to Brockett 39. The interested reader is referred to 37, 38 for further details. According to this formulation, the confi guration space of a soft-rigid locomotor is characterized by the traditional gen- eralized variables for the rigid components and a subspace of the six dimensional strain space for the soft ones, where the strains are considered to be section-wise constant for the sake of discretization (Fig. 4). Following this defi nition, the kinematics of a hybrid system can be described by the following equations : j= B B Bjq q qj+ j, g g gj(X) = eX b j , j(X) = Ad1 g g gijg g gj(X) i+Ad 1 g g gj(X)Tg g gj(X)B B Bj q q q j, (1) where i j are body (or section) indexes, q q qj Rnjis the body j generalized coordinate, B B Bj R6nj defi nes the basis for the subspace of motion allowed by the joint (or strain) j, j R6is the joint twist, j R6 is a fi xed twist modeling the inextensibility constrain (equal to zero for rigid bodies or extensible soft bodies), X 0 L is the soft body curvilinear abscissa (equal to 1 for the rigid bodies), g g gijg g gj SE(3) represents the jthbody position and orientation with respect to the ithbody and j R6is the body j velocity twist. Finally, Adg g gjand Tg g gj R66are respectively the Adjoint and Tangent operator of the exponential map 37. Successive applications of the equations in (1) for all the bodies of the hybrid system, yields to the defi nition of the geometric Jacobian J J JjR6nfor each soft/rigid body, which relates the generalized coordinate vector q q q Rnand the jth body velocity twist jas shown below 37. j(X) = J J Jj(X) q q q .(2) The knowledge of the geometric Jacobians J J Jjgives way to the application of standard differential calculus methods, yielding to the dynamic equation of a hybrid system in the standard form 38: MMM(q q q) q q q+C C C(q q q, q q q) q q q+K K K(q q qq q q) = +F F F(q q q, q q q) ,(3) where MMM Rnnis the generalized mass matrix, C C C Rnn is the generalized Coriolis matrix, K K K Rnnis the gen- eralized stiffness matrix, q q q Rnis the elastic joint (or strain) reference confi guration and Rnis the vector of internal actuation 38. The generalized external force vector F F F Rn includes the action of gravity and the fl uid- structure interaction. Specifi cally for our application, the thrust is generated by the dynamic interaction between the soft fi lament and the surrounding fl uid, which, in our model, is modeled thanks to the Lighthill three-dimensional large amplitude elongated body theory 40, i.e. by a distributed force along the fl agellum that reads 37: F F FD(X) = D D D(X)|v v v(X)| (X) .(4) Above, v v v(X) R3is the translational part of the velocity twist (X) and D D D(X)R66is the screw matrix of the drag coeffi cients equal to 37: D D D(X) = diag(0,0,0,1/2CDt,CDn,CDn)R(X)w,(5) where R(X) R is the radius of the fl agellum at X, CDt and CDnare respectively the tangential and normal drag coeffi cients, and wis the water density. To model the three parts of our artifi cial fl agellum we have employed two different kinds of soft bodies and one rigid body. The fl agellar motor is simply modeled as an actuated revolute joint, the hook is represented by an inexten- sible Cosserat rod with constant curvatures and constrained torsion, while the fi lament is described by an inextensible Kirchhoff-Love rod. Accordingly, the motion subspaces are defi ned by the following basis and inextensibility constrain twists (assuming the x-axis lying along the rotation axis for the revolute joint and along the midline tangent for the rods): B B Bm= 1 0 0 0 0 0 ,B B Bh= 00 10 01 00 00 00 ,B B Bf= 100 010 001 000 000 000 , h= f= 0 0 0 1 0 0 , (6) where subscripts m, h and f refer to the motor, the hook and the fi lament, respectively. For what concerns the net motion of the canister, we employ two different models in this work according to the phenomena we want to describe. In section III-A, a constrained rectilinear motion is used to select the appropriate number of sections into which divide the fi la- ment, while in the experimental section IV, a controlled free motion is tested in order to measure the fl agellum dynamic reaction with the surrounding fl uid (including thrust). Thus, the net motion sub-spaces are defi ned by the following basis twists respectively (assuming the x-axis is aligned with the heading): B B Bc= 0 0 0 1 0 0 ,B B Bc= 100000 010000 001000 000100 000010 000001 ,(7) 3330 where the subscript c refers to the canister. In both cases, the rotation of the motor qm(t) R is prescribed, leading to two mixed forward-inverse dynamic problems. For the constrained rectilinear swimming, the un- knowns are the time functions of the generalized coordinates qc(t) R, q q qh(t) R2, q q qf(t) R3and the torque exerted by the motor m(t) R to guarantee the required shaft rotation. For the controlled free motion, the net displacement of the canister is also prescribed, leaving as unknowns the reaction forces/torques c(t) R6exerted by the ground to keep the canister stationary, the torque exerted by the motor m(t) and the motion of the rest of the bodies q q qh(t), q q qf(t). Both mixed problems can be solved by inverting and numerically integrating a proper recombination of the columns of (3) (41, example 9.1). Equivalently, the recursive algorithm described in 37, 38 can be employed. A. Coarseness Selection The accuracy in capturing the elastodynamic response of the system based on actuation is dependent on the capability of the model to describe the variable cross-section of the fl agellum. This is accounted for by representing the fl agel- lum with a fi nite series of constant cross-section segments arranged along the length of the fl agellum according to a gradient of decreasing girth. Numerical accuracy is postulated on the capability of the model to capture a reference parameter (e.g. swimming speed) at varying degree of resolution, similarly to the process of grid independence analysis of other mesh-based solvers. The resolution is determined, here, by the number of discrete constant cross-section segments employed to model the fl agellum. By taking as a reference a constrained linear motion of the apparatus, we computed the forward speed of the body obtained at steady state with respect to the angular speed of the shaft of the motor. Repeating this test with increasing number of segments, we look for convergence of the control parameter (i.e. swimming speed). As shown in Fig.5, we found that the model were gen- erating non-physical behavior for a 2-sections fi lament at high rotational speed, while no signifi cant differences where observed for the 3-, 4-, and 5-sections case. If the 5-section case is taken as the reference value, the 3 and 4 segment output show a convergence mean error of 4.5 and 4.3 % respectively. Thus, we selected the 3-sections model for the rest of the simulations in this work. IV. EXPERIMENTAL TESTING The characterization of the propulsive routine of the fl agellated soft robot requires to correlate the helical wave formation along the fi lament with the magnitude of the net forward thrust. To do so, it is necessary to capture the kinematic of the elastic fi lament as a response to both the motor rotation and the interaction with the surrounding fl uid. While a full characterization of this dynamic response requires the prototype to be observed in a towed-test case or in a self-propelled case, the fi rst set of tests described here will be performed
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