A century of line-fish research in South Africa bibliography and review of research trends

1、A Century of Linefish Research in South Africa: Bibliography and review of research trendsEdited byR.M. Palmer, P.D. Cowley & B.Q. MannWith contributions fromA.W. Paterson, R.H. Bennett, T. HechtAcknowledgementsThis report published by the South African Network for Coastal and Oceanic Research (SANC

2、OR) was co-operatively sponsored by funds obtained from the South African Environmental Observation Network (SAEON) Elwandle Node and the Marine Linefish Research Group (MLRG). Numerous individuals from several South African academic and research institutions are thanked for their support and contri

3、butions to the bibliography. Illustrations of fish on the front cover courtesy of SAIAB / NISC , while images were provided by SAIAB, P.D. Cowley, A. Gtz and W.M. Potts.This report should be cited as follows: Palmer, R.M., Cowley, P.D. & B.Q. Mann (Eds.) 2008. A Century of Linefish Research in South

4、 Africa: Bibliography and review of research trends. South African Network for Coastal and Oceanic Research Occasional Report No. 6: 108 pp.An electronic copy of this report and the bibliography can be downloaded from the SANCOR website http:/sancor.nrf.ac.za or is available from SAIAB saiabru.ac.za

5、Table of contentsAbstractivIntroduction1Methods6Literature sources6Analysis of research trends7Definitions of themes and focus areas7Taxonomy and systematics7Biology8Ecology9Management and fisheries9Mariculture10Elasmobranchs11Other12Results and Discussion13Analysis of publication by theme13Analysis

6、 of geographical regions13Analysis of the temporal trends15Period 1900 194916Period 1950 195917Period 1960 1969 18Period 1970 197919Period 1980 1989 20Period 1990 199922Period 2000 200723The future of linefish research in South Africa24Linefish researchers26Conclusion28Literature cited29Appendix 134

7、Appendix 235108AbstractA substantial literature exists on South African linefish species but has never been collated to produce a bibliography of research outputs. This document provides the first compilation of published and selected unpublished works (including student theses) on this subject, the

8、reby providing scientists and managers with a valuable research tool. Approximately 1900 references were sourced and categorized into seven themes by their titles and keywords. The themes were: Taxonomy and systematics, Biology, Ecology, Management and fisheries, Mariculture, Elasmobranchs and Other

9、. Publications within each theme were further classified according to focus areas (i.e. specific research disciplines). The bibliography was analysed to reveal trends in contributions by geographic region, focus areas (by decade) and research capacity. Research outputs were dominated by contribution

10、s in the Management theme (44%) followed by Biology (20%), Ecology (12%) and Elasmobranchs (12%). Research on locally occurring linefish species has been conducted throughout South Africa and its neighbouring countries (Mozambique and Namibia), with the greatest contribution being from KwaZulu-Natal

11、 (23%). Over the past 100 years, the focus of linefish research has shifted from taxonomic investigations to biological and management related research. Of the 128 researchers who have published papers, 42% are still active. However, South Africa has lost research capacity as 21% have emigrated, the

12、 majority over the past 20 years. Despite this, linefish research is still very active, with all major research and academic institutions having ongoing projects and registered students. It is envisaged that future research will remain directed at informing management decisions, while technological

13、advances particularly in the fields of genetics and biotelemetry will make significant contributions.SANCOR Occasional ReportIntroductionHook and line fishing in South Africa dates back to the mid 1600s when the Dutch first colonized the Cape. However, ichthyological research only began in 1895 when

14、 J.D.F. Gilchrist was appointed as a marine biologist for the Cape Colony. Initially, research by Gilchrist and other prominent ichthyologists, such as J.L.B. Smith and K.H. Barnard, focused on the taxonomic descriptions of fish (including linefish species). However, the development of a thriving fi

15、shing industry necessitated research on target species and later on marine ecosystems. The primary role of linefish research in South Africa, as in the rest of the world, is to produce the knowledge needed by government to implement management, and to maintain an environment conducive to the develop

16、ment and sustainability of the fishery (Anon 1997).The Department of Environmental Affairs and Tourism Branch: Marine and Coastal Management (MCM) is the regulatory authority responsible for managing and conserving marine living resources. Research scientists based at academic and research instituti

17、ons, as well as MCM, have conducted research on more than 100 linefish species in order to advise the Minister of Environmental Affairs and Tourism on how to manage South Africas commercial, recreational and subsistence linefisheries.Despite the development of marine science in South Africa, which t

18、ook place during a time of increasing political isolation from the rest of the world, the standard of linefish research has remained high. This can be attributed to good research co-ordination, largely facilitated by the South African Network for Coastal and Oceanic Research (SANCOR) and its predece

19、ssor, the South African National Committee for Oceanographic Research, and strong collaborative efforts and co-operation between research scientists based at the major research institutions. SANCOR offers assistance to both government and non-governmental organizations, to carry out tasks related to

20、 the coastal and marine environment. Moreover, SANCOR provides a platform for collaboration and communication in marine science and management. Furthermore, SANCOR is involved in planning for the future, facilitating research, advising on research priorities and communicating research findings. Ther

21、e are seven research co-ordinating groups that fall under SANCOR. Two are relevant to linefish research; namely the South African Marine Linefish Management Association (SAMLMA) and the Marine Linefish Research Group (MLRG). SAMLMA is a formally constituted interest group, which is recognized in ter

22、ms of the Marine Living Resources Act (No 18 of 1998) as the official body representing linefish users. SAMLMA comprises representatives of the recreational and commercial linefishing sectors, as well as regional conservation authorities and linefish researchers. The primary purpose of SAMLMA is to

23、facilitate communication between the role-players involved in the linefish industry and to discuss and debate issues surrounding management and the promulgation of new regulations. This body plays a crucial role in enabling stakeholders in the linefishery to contribute towards improved management. T

24、he MLRG, on the other hand, focuses on co-ordinating linefish research efforts and direction. The aims of this co-ordinating group are: To formulate and prioritise linefish research projects To solicit funding for linefish research projects To facilitate the transfer of linefish research results to

25、managers and users To organise periodic workshops and conferences The MLRG has a membership of approximately 50 researchers and students based at several academic and research organizations throughout South Africa (Table 1).Table 1. Institutional members of the Marine Linefish Research Group (MLRG),

26、 with contact details.Bayworld (Port Elizabeth Museum) P.O. Box 13147, Humewood 6013+27 (0)41 584 0650prbayworld.co.zawww.bayworld.co.zaCSIRP.O. Box 395, Pretoria 0001+27 (0)12 841 2911callcentrecsir.co.zawww.csir.co.zaMarine and Coastal ManagementPrivate Bag X2, Roggebaai 8012+27 (0)21 402 3911www.

27、.za/about/Nelson Mandela Metropolitan UniversityP.O. Box 77000, Port Elizabeth 6031+27 (0)41 504 1111infonmmu.ac.zawww.nmmu.ac.zaOceanographic Research InstituteP.O. Box 10712, Marine Parade+27 (0)31-3288222.zaRhodes University (Department of Ichthyology and Fi

28、sheries Science)P.O. Box 94, Grahamstown 6140+27 (0)46 603 8415/6difsru.ac.zawww.ru.ac.za/adademic/departments/difs/Rhodes University (Department of Zoology)P.O. Box 94, Grahamstown 6140+27 (0)46 603 8525www.ru.ac.za/adademic/departments/zooento/South African Environmental Observation NetworkPrivate

29、 Bag 1015, Grahamstown 6140+27 (0)46 622 9899www.saeon.ac.zaSouth African Institute for Aquatic BiodiversityPrivate Bag 1015, Grahamstown 6140+27 (0)46 603 5800saiabru.ac.zawww.saiab.ru.ac.zaTwo Oceans AquariumP.O. Box 50603, Cape Town 8002+ 27 (0)21 418 3823aquariumaquarium.co.zawww.aquarium.co.zaU

30、niversity of Cape Town (Zoology Department)Private Bag X3, Rondebosch 7701+27 (0)21 650 2712meg.lederboeruct.ac.zawww.zoology.uct.ac.zaUniversity of KwaZulu-NatalUniversity of KwaZulu-Natal, Durban 4041+27 (0)31 260 2212 enquieriesukzn.ac.zawww.ukzn.ac.zaUniversity of PretoriaUniversity of Pretoria,

31、 Pretoria 0002+27 (0)12 420-3111cscup.ac.zawww.up.ac.zaUniversity of the Western CapePrivate Bag X17, Bellville, Cape Town, 7535+27 (0)21 959 2911servicedeskuwc.ac.zawww.uwc.ac.zaUniversity of ZululandPrivate Bag X1001, KwaDlangezwa 3886+27 (0)35 902 6030www.uzulu.ac.zaOver the past 100 years, linef

32、ish research trends in South Africa have been influenced by a number of factors. Although human interest and curiosity have played a role, social, economic, political and technological developments have generally dictated research focus areas and influenced the direction of South African linefish re

33、search. Substantial research has been conducted, but research outputs are widely distributed in the peer reviewed literature and much documentation is in the form of unpublished reports and theses. This presents an obstacle to researchers by making awareness of, and access to “grey literature” diffi

34、cult, thus preventing them from deriving the full benefits of work that has already been done. Therefore, a comprehensive bibliography of extant work would serve a valuable purpose. Several studies have assessed various sectors of the linefishery (e.g. Brouwer et al. 1997, Griffiths 2000) but none h

35、ave covered the full extent of the available literature. The need for such a document was the primary motivation for the present compilation, and it is hoped that the bibliography presented here will serve as a useful reference to scholars and researchers in this field. Moreover, this bibliography p

36、rovides an opportunity to reflect on what has been done in the subject over the past 100 years, review the trends in research focus areas and provide some insight into future research needs.This bibliography is restricted to studies conducted on South African linefish species and covers a range of s

37、ubjects including taxonomy, biology and management. As a first attempt, it is obvious that some literature will have been omitted. Identification of the gaps in its coverage, studies recently published and work still to be written up, mean that the bibliography will need to be updated on a regular b

38、asis. This may be possible via a website, where students, researchers and/or librarians can add unlisted references. The aim of this study was to compile a comprehensive bibliography of linefish research outputs and to investigate geographic and temporal trends over the past century. MethodsLiteratu

39、re sourcesLiterature on South African linefish species was sourced in the following way: Publication citations were searched using available electronic databases, such as Biblioline and Science Direct (in the SAIAB / Rhodes University library) Reference lists of a number of key linefish publications

40、 were scanned for citations Contributions were made by academic and research libraries, notably the Oceanographic Research Institute (ORI) library in Durban Several active linefish researchers provided their personal bibliographies and citation lists. These searches yielded approximately 1900 public

41、ation citations, and included: peer reviewed published articles, Honours, Masters and PhD theses, published reports, popular articles, books, conference and workshop proceedings, conference posters and unpublished reports. A full list of these publications is provided in Appendix 2.Analysis of resea

42、rch trendsBased on the title and keywords (when available), each publication was categorized and allocated to one of seven themes:1) Taxonomy and systematics2) Biology3) Ecology4) Management and fisheries5) Mariculture6) Elasmobranchs7) OtherWithin these themes, each publication was further categori

43、zed according to distinct focus areas (e.g. life history studies within the Biology theme). Some publications were allocated to more than a single focus area and were sequentially numerated as a publication in each of the respective focus areas. Definitions of themes and focus areas 1 Taxonomy and s

44、ystematics1.1 Genetics: Publications in which molecular techniques were used to investigate phylogeny, phylogeography, population genetics, etc.1.2 New records and descriptions: Publications that report new species descriptions, taxonomic revision or new distribution records of fish species.1.3 Taxo

45、nomy and systematics: Publications relating to the classification of fish or the relationship between species or stocks within a single species. This does not include studies where genetics have been used to do this. 2 BiologyPublications in this theme focused only on aspects of the biology of linef

46、ish species, and the results were not management orientated.2.1 Physiology: Publications that focus on physiological aspects of linefish species (e.g. metabolic rates, temperature preference, food conversion ratios, etc.).2.2 Life history: Studies in which the life history strategies of fish are des

47、cribed.2.3 Reproduction: Studies that focus on aspects of the reproductive biology of fishes, such as gonosomatic index (GSI), reproductive seasonality, age at maturation, etc.2.4 Age and growth: Publications that focus on aspects of the age and growth of fishes.2.5 Diet and feeding: Publications in

48、 which aspects of biological studies focused on the diet and feeding of fish are discussed.2.6 Tagging and movement: Publications involving tagging of linefish species or which describe the movement patterns of the fishes in question.2.7 Distribution, abundance and population dynamics: Studies in wh

49、ich the distribution, abundance or population dynamics of fish were investigated, but not applied to management.2.8 Egg and larval studies: Publications that focus on aspects of the biology of eggs and larval fish.2.9 Methods, research programmes: Publications in which studies focused on research me

50、thods for collection of biological data, as well as publications focused on biological research programmes.3 EcologyPublications within this theme were similar to the biology theme; however, research emphasis was placed on the ecosystem rather than the fish species. Similarly, the results of these s

51、tudies were also not related to aspects of management. The identified focus areas were as follows: 3.1 Habitat: Publications focused on the study of habitats and habitat use, specifically by linefish species.3.2 Oceanography: Publications in which studies on the effects of oceanographic occurrences

52、on linefish are discussed. (e.g. the effects of ocean currents on the distribution of linefish species).3.3 Distribution, dispersal, seasonal/spatial analysis, density, biomass: Publications in which ecosystem level studies focusing on distribution, dispersal and seasonal/spatial analysis of species

53、 density and biomass are discussed.3.4 Trophic relationships and food cycle: Studies on the trophic relationships between fishes or between fishes and invertebrates. (e.g. stable carbon isotope analysis, food webs etc.).4 Management and fisheriesPublications within this theme focus largely on the ma

54、nagement of linefish species and include the following focus areas. 4.1 Stock assessments, modelling and catch statistics: Publications that focus on stock assessments of linefish species, and studies where catch statistics and data modelling have been used. 4.2 Tagging: Publications in which manage

55、ment decisions are made or suggested, based on the results of tagging studies.4.3 Research programmes/objectives: Includes publications that focus on research programmes/objectives rather than the results that research programmes provide. (e.g. South Coast gamefish project and Research Highlights se

56、ries).4.4 Status reports: Publications in which the status of fisheries or fish stocks are given.4.5 Fisheries, resource use and economics: Publications focusing on fisheries, resources use or the economics or socio-economics of the linefishery.4.6 Biology, ecology, age and growth: Publications in w

57、hich management decisions are made or suggested based on biological or ecological study results. Publications in this focus group may be similar to those found in the biology theme; however, the results of these studies have been used for management.4.7 Policy and Regulations: Publications that are focused on the development, rationale and application of management in the linefishery. This includes legislation, fishing rights and quotas, MPAs